Factsheet for PGSC0003DMT400083166

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g069570.2.1	Tomato	nucleus, plastid	96.41	96.41
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	73.86	73.86
KRH56857	Soybean	nucleus	65.69	67.0
VIT_17s0000g06860.t01	Wine grape	nucleus	66.01	66.23
CDY42860	Canola	cytosol, plastid	60.13	65.95
KRH03094	Soybean	cytosol	63.73	65.0
CDY02165	Canola	nucleus	63.4	63.4
CDY47025	Canola	nucleus, plastid	57.52	63.31
KRH63266	Soybean	nucleus	60.13	63.23
CDY23079	Canola	nucleus	62.75	63.16
Bra012978.1-P	Field mustard	nucleus	62.75	62.95
Bra029328.1-P	Field mustard	nucleus, plastid	60.13	62.59
GSMUA_Achr4P23350_001	Banana	nucleus	50.65	62.5
KRH54642	Soybean	nucleus	59.48	62.33
AT5G61210.1	Thale cress	nucleus	60.13	61.33
Bra005958.1-P	Field mustard	cytosol	57.52	60.27
CDX78314	Canola	cytosol	56.86	59.39
CDX73442	Canola	nucleus	39.87	58.94
GSMUA_Achr5P01680_001	Banana	cytosol	49.02	54.35
AT5G07880.1	Thale cress	nucleus	44.12	53.78
Zm00001d019505_P001	Maize	nucleus	48.69	52.46
TraesCS7A01G049300.1	Wheat	nucleus, plastid	48.69	51.2
CDX99033	Canola	endoplasmic reticulum, extracellular	58.17	50.86
CDX69988	Canola	endoplasmic reticulum, extracellular	56.54	50.58
TraesCS7D01G044400.1	Wheat	nucleus, plastid	50.0	50.16
KXG34983	Sorghum	nucleus, plastid	47.06	49.66
PGSC0003DMT400072798	Potato	cytosol	42.48	49.06
TraesCS4A01G435200.1	Wheat	cytosol, plastid	49.35	48.24
CDX81075	Canola	nucleus	14.71	45.0
Bra013246.1-P	Field mustard	cytosol	44.44	44.74
Os02t0437200-01	Rice	plasma membrane	21.24	43.62
HORVU7Hr1G008760.1	Barley	nucleus, plastid	32.68	41.67
Bra032989.1-P	Field mustard	nucleus	51.63	41.25
Bra009311.1-P	Field mustard	plastid	57.52	17.29

Protein Annotations

EnsemblPlants:PGSC0003DMT400083166	EnsemblPlantsGene:PGSC0003DMG400033088	EntrezGene:102580205	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom
ncoils:Coil	PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	PGSC:PGSC0003DMG400033088	RefSeq:XP_006354763.1
SEG:seg	SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI000295BD78	UniProt:M1D6M6	MapMan:22.7.3.1

Description

Synaptosomal associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400033088]

Coordinates

chr6:+:51450051..51455890

Molecular Weight (calculated)

33997.5 Da

IEP (calculated)

7.395

GRAVY (calculated)

-1.023

Length

306 amino acids

Sequence
(BLAST)

001: MHGLKKSPLH WSARKKSADP VAHSNSGSNP FDSDDESDKK QTVKPSRRIS SEPSAATPNL STNPFDDDEI KETPSHAYST LTARNKYKND FRESGGFENQ
101: TVDELENYAV YRSEETTKSV NSCLKIAQDM REDATKTLIT LHQQGEQITR THMTAADIDH DLSRGEKLLG SLGGIFSKTW KPKTSRPITG PVITRMSDDP
201: VQRRGNHLEQ REKLGLSSAP KARSSSRTPP PEPTNALQKV EAEKAKQDDG LSELSDLLGE LKNMAVDMGS EIGRHKEALD HTEQDVDELG TRVQGANRRI
301: RRLLGK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.