CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX98070
CDY15993
CDY26558
CDY26559
CDY30074

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G61210.1	CDX98070	AT1G12360.1	11591731
AT5G61210.1	CDY15993	AT1G12360.1	11591731
AT5G61210.1	CDY26558	AT1G12360.1	11591731
AT5G61210.1	CDY26559	AT1G12360.1	11591731
AT5G61210.1	CDY30074	AT1G12360.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02165	Canola	nucleus	94.08	93.46
AT5G61210.1	Thale cress	nucleus	89.14	90.33
CDY47025	Canola	nucleus, plastid	79.61	87.05
CDY42860	Canola	cytosol, plastid	79.28	86.38
CDX78314	Canola	cytosol	65.79	68.26
CDX73442	Canola	nucleus	44.41	65.22
Solyc06g069570.2.1	Tomato	nucleus, plastid	63.49	63.07
PGSC0003DMT400083166	Potato	nucleus	63.16	62.75
PGSC0003DMT400063113	Potato	mitochondrion, nucleus	63.16	62.75
KRH56857	Soybean	nucleus	61.84	62.67
KRH03094	Soybean	cytosol	60.86	61.67
VIT_17s0000g06860.t01	Wine grape	nucleus	61.84	61.64
GSMUA_Achr4P23350_001	Banana	nucleus	49.67	60.89
CDX99033	Canola	endoplasmic reticulum, extracellular	69.41	60.29
KRH63266	Soybean	nucleus	57.57	60.14
KRH54642	Soybean	nucleus	57.24	59.59
CDX69988	Canola	endoplasmic reticulum, extracellular	66.45	59.06
CDX81075	Canola	nucleus	19.08	58.0
CDY33792	Canola	cytosol	50.33	57.52
CDY16118	Canola	cytosol	50.33	57.52
Solyc03g115470.2.1	Tomato	nucleus	64.14	56.85
GSMUA_Achr5P01680_001	Banana	cytosol	50.0	55.07
TraesCS7A01G049300.1	Wheat	nucleus, plastid	48.68	50.86
Zm00001d019505_P001	Maize	nucleus	47.37	50.7
KXG34983	Sorghum	nucleus, plastid	48.03	50.34
TraesCS7D01G044400.1	Wheat	nucleus, plastid	49.67	49.51
TraesCS4A01G435200.1	Wheat	cytosol, plastid	50.0	48.56
Os02t0437200-01	Rice	plasma membrane	21.71	44.3
HORVU7Hr1G008760.1	Barley	nucleus, plastid	34.54	43.75

Protein Annotations

EnsemblPlants:CDY23079	EnsemblPlantsGene:GSBRNA2T00021553001	Gene3D:1.20.5.110	InterPro:IPR000727	InterPro:T_SNARE_dom	ncoils:Coil
PANTHER:PTHR19305	PANTHER:PTHR19305:SF7	PFscan:PS50192	ProteinID:CDY23079	ProteinID:CDY23079.1	SEG:seg
SMART:SM00397	SUPFAM:SSF58038	UniParc:UPI0004EDE47F	UniProt:A0A078GCN9	MapMan:22.7.3.1	:

Description

BnaC07g31080DBnaC07g31080D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCN9]

Coordinates

chrLK032139:-:481787..483849

Molecular Weight (calculated)

34125.8 Da

IEP (calculated)

8.445

GRAVY (calculated)

-1.106

Length

304 amino acids

Sequence
(BLAST)

001: MFGLRKSPAK LPKHNSADPG FHKSSKPNPF DSDDELDNNS NKHTLNPSKR TSSEPSLADM TNPFDGEEKG FTSSSKQSLT SNSRYQYKNN FRDSGGVENQ
101: SVQELEGYAV YKAEETTKSV QGCLKVAEDI RSDATRTLVM LHEQGEQITR THHKAVEIDH DLSRGEKLLG SLGGMFSKTW KPKKTRPING PVITRDHSPT
201: RRINHLEKRE KLGLNPAPKA QSRSREPLPE SADAYQRVEM EKAKQDDGLS DLSDLLGDLK NMAVDMGSEI EKQNKGLDHL QDDVDELNFR VQQSNQRGRR
301: LLGK

Best Arabidopsis Sequence Match ( AT5G61210.1 )
(BLAST)

001: MFGLRKSPAN LPKHNSVDLK SSKPNPFDSD DESDNKHTLN PSKRTTSEPS LADMTNPFGG ERVQKGDSSS SKQSLFSNSK YQYKNNFRDS GGIENQSVQE
101: LEGYAVYKAE ETTKSVQGCL KVAEDIRSDA TRTLVMLHDQ GEQITRTHHK AVEIDHDLSR GEKLLGSLGG MFSKTWKPKK TRPINGPVVT RDDSPTRRVN
201: HLEKREKLGL NSAPRGQSRT REPLPESADA YQRVEMEKAK QDDGLSDLSD ILGELKNMAV DMGSEIEKQN KGLDHLHDDV DELNFRVQQS NQRGRRLLGK

Arabidopsis Description

SNAP33SNP33 [Source:UniProtKB/TrEMBL;Acc:A0A178UGR9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.