CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX69988
CDX73442
CDX73851	plasma membrane
CDX78314
CDX81075
CDX93553
CDX95050
CDX97497
CDX99033
CDY01061	plasma membrane
CDY02165
CDY08492	plasma membrane
CDY23079
CDY31137
CDY42860
CDY47025
CDY70958	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12360.1	CDX93553	AT1G08560.1	11157980
AT1G12360.1	CDX95050	AT1G08560.1	11157980
AT1G12360.1	CDX97497	AT1G08560.1	11157980
AT1G12360.1	CDY31137	AT1G08560.1	11157980
AT1G12360.1	CDX73851	AT3G11820.1	23572542
AT1G12360.1	CDY01061	AT3G11820.1	23572542
AT1G12360.1	CDY08492	AT3G11820.1	23572542
AT1G12360.1	CDY70958	AT3G11820.1	23572542
AT1G12360.1	CDX73851	AT3G11820.1	23572542
AT1G12360.1	CDY01061	AT3G11820.1	23572542
AT1G12360.1	CDY08492	AT3G11820.1	23572542
AT1G12360.1	CDY70958	AT3G11820.1	23572542
AT1G12360.1	CDX69988	AT5G07880.1	11591731
AT1G12360.1	CDX73442	AT5G07880.1	11591731
AT1G12360.1	CDX78314	AT5G07880.1	11591731
AT1G12360.1	CDX81075	AT5G07880.1	11591731
AT1G12360.1	CDX99033	AT5G07880.1	11591731
AT1G12360.1	CDY02165	AT5G61210.1	11591731
AT1G12360.1	CDY23079	AT5G61210.1	11591731
AT1G12360.1	CDY42860	AT5G61210.1	11591731
AT1G12360.1	CDY47025	AT5G61210.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0452500-01	Rice	cytosol, plasma membrane	54.09	74.78
Bra026974.1-P	Field mustard	cytosol	99.37	23.72
CDY26559	Canola	cytosol	99.37	23.72
CDY15993	Canola	cytosol	99.37	23.69
AT1G12360.1	Thale cress	cytosol	96.86	23.12
CDX98070	Canola	cytosol	93.71	22.41
CDY30074	Canola	cytosol	93.71	22.31
Solyc08g079520.2.1	Tomato	nucleus	86.16	20.57
VIT_13s0019g05000.t01	Wine grape	cytosol	81.76	19.55
KRH28021	Soybean	nucleus	80.5	19.31
KRH57307	Soybean	cytosol, nucleus	80.5	19.25
KRH04038	Soybean	cytosol	78.62	18.77
KRH77416	Soybean	cytosol	77.36	18.11
CDY38041	Canola	nucleus	70.44	16.59
CDY68111	Canola	cytosol	68.55	16.29
CDX90817	Canola	cytosol	67.3	15.99
CDX94488	Canola	cytosol	64.15	15.34
CDX86721	Canola	cytosol	62.89	15.17
CDY39875	Canola	cytosol	18.87	9.17
CDY70457	Canola	cytosol	18.24	8.1
CDX79215	Canola	cytosol	20.75	7.97
CDY71507	Canola	cytosol, golgi	11.95	6.4
CDY63506	Canola	cytosol	23.9	6.31
CDY29213	Canola	cytosol	23.9	6.31
CDY38360	Canola	cytosol	20.13	5.62
CDY13575	Canola	cytosol	18.87	5.24
CDX79222	Canola	cytosol, mitochondrion	6.92	4.06
CDY52165	Canola	cytosol	7.55	3.33
CDY48989	Canola	cytosol	3.77	1.95
CDY49318	Canola	plastid	0.63	0.82
CDY52164	Canola	cytosol	0.0	0.0
CDX79223	Canola	cytosol, plastid	0.0	0.0
CDX79189	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY26558	EnsemblPlantsGene:GSBRNA2T00035422001	Gene3D:3.40.50.2060	GO:A0A078GPL0	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:Sec1-like	InterPro:Sec1-like_sf	PANTHER:PTHR11679
PANTHER:PTHR11679:SF59	PFAM:PF00995	ProteinID:CDY26558	ProteinID:CDY26558.1	SEG:seg	SUPFAM:SSF56815
UniParc:UPI0004EE7186	UniProt:A0A078GPL0	MapMan:35.1	:	:	:

Description

BnaA09g47190DBnaA09g47190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GPL0]

Coordinates

chrLK032192:+:133651..135434

Molecular Weight (calculated)

18162.1 Da

IEP (calculated)

9.768

GRAVY (calculated)

-0.208

Length

159 amino acids

Sequence
(BLAST)

001: MSYSDSDSSS QAADYKNFRQ ITRERLLYEM LRSAKTGSSK STWKVLIMDK LTVKIMSYAC KMADITQEGV SLVEDIFRRR QPLPSMDAIY FIQPTKENVI
101: MFLSDMSGKS PLYKKAFVFF SSPVSKELVG HIKKDSSVLP RIGALREMNL EFFAIDSQV

Best Arabidopsis Sequence Match ( AT1G02010.1 )
(BLAST)

001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW

Arabidopsis Description

SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.