CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032660.1-P	Field mustard	cytosol	86.07	97.48
AT1G02010.4	Thale cress	cytosol, nucleus, peroxisome	94.67	90.9
VIT_15s0048g00970.t01	Wine grape	cytosol	65.63	71.68
CDY26558	Canola	cytosol	16.59	70.44
KRH65274	Soybean	cytosol	69.63	70.25
Solyc01g091290.2.1	Tomato	cytosol, unclear	19.26	69.89
KRH76261	Soybean	nucleus	69.04	69.55
VIT_15s0045g00060.t01	Wine grape	cytosol	46.81	69.3
PGSC0003DMT400020076	Potato	cytosol	53.04	68.58
Solyc01g091300.2.1	Tomato	nucleus	52.15	67.05
GSMUA_Achr9P24460_001	Banana	cytosol	65.04	66.21
CDY26559	Canola	cytosol	64.3	65.17
CDY15993	Canola	cytosol	64.3	65.07
Os06t0135900-01	Rice	plasma membrane	50.22	64.94
CDY30074	Canola	cytosol	63.85	64.52
CDX98070	Canola	cytosol	63.26	64.21
KXG19223	Sorghum	cytosol	61.33	63.3
TraesCS3B01G607200.1	Wheat	cytosol	59.56	61.19
TraesCS3A01G538700.1	Wheat	cytosol	59.56	61.19
TraesCS3D01G542100.1	Wheat	cytosol	59.56	61.19
Zm00001d045434_P004	Maize	cytosol	60.89	59.65
HORVU3Hr1G117280.1	Barley	cytosol	59.41	59.14
CDX90817	Canola	cytosol	56.89	57.4
CDY68111	Canola	cytosol	56.74	57.25
CDX94488	Canola	cytosol	56.15	56.99
CDX86721	Canola	cytosol	55.56	56.9
CDY49318	Canola	plastid	7.56	41.8
CDY70457	Canola	cytosol	10.81	20.39
CDX79223	Canola	cytosol, plastid	1.93	19.7
CDY38360	Canola	cytosol	16.15	19.16
CDY63506	Canola	cytosol	16.74	18.77
CDY29213	Canola	cytosol	16.59	18.6
CDY52164	Canola	cytosol	1.48	18.52
CDX79215	Canola	cytosol	11.26	18.36
CDY39875	Canola	cytosol	8.89	18.35
CDY13575	Canola	cytosol	14.96	17.63
CDY52165	Canola	cytosol	9.33	17.5
CDX79189	Canola	cytosol	7.11	17.45
CDX79222	Canola	cytosol, mitochondrion	6.52	16.24
CDY48989	Canola	cytosol	7.41	16.23
CDY71507	Canola	cytosol, golgi	4.59	10.44

Protein Annotations

EnsemblPlants:CDY38041	EnsemblPlantsGene:GSBRNA2T00065105001	Gene3D:3.40.50.2060	GO:A0A078HK99	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:Sec1-like	InterPro:Sec1-like_sf	PANTHER:PTHR11679
PANTHER:PTHR11679:SF59	PFAM:PF00995	PIRSF:PIRSF005715	ProteinID:CDY38041	ProteinID:CDY38041.1	SUPFAM:SSF56815
UniParc:UPI0004EEA00B	UniProt:A0A078HK99	MapMan:13.4.2.4	:	:	:

Description

BnaCnng09020DProtein transport Sec1a [Source:Projected from Arabidopsis thaliana (AT1G02010) UniProtKB/Swiss-Prot;Acc:Q9C5P7]

Coordinates

chrLK032414:+:222481..226960

Molecular Weight (calculated)

76557.1 Da

IEP (calculated)

8.649

GRAVY (calculated)

-0.452

Length

675 amino acids

Sequence
(BLAST)

001: MSFSDSESSS HPRDGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSK SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAYI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHDQAL QTLYAENAEN SRHFNICLNM MATRIATVFA
201: SLKELPFVRY RAAKSTAPRD LVPSKLAAAI WDCISKFKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSKEGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVEIAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAAAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLAKLSPVDM KVISNMQLIA GSPENKTKSG SFSLKFDTGK TKQANRKDRS
501: GEEETWQLFR FYPMLEELLE KLVKGDLSKS DYLCMNQSSH KEEESESRTG SVRKSSAPTA VPERKATPHS MRSRRTATWA LACIPFFLRT NSDSVLKSAS
601: LDLKKLGQRI FVFIIGGATR SELRVCHKLT SSLRREVVLG STSFDDPPQY ITKLKLLSEK DIAGAPAQPF KPQYW

Best Arabidopsis Sequence Match ( AT1G02010.2 )
(BLAST)

001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAL LKSASTEFKK LGQRIFVFII
601: GGATRSELRV CHKLTSSLRR EVVLGSTSFD DPPQYITKLK LLSEKDIQGA PAQPFKPQYW

Arabidopsis Description

SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.