Factsheet for VIT_15s0045g00060.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g00970.t01	Wine grape	cytosol	97.37	71.84
Solyc01g091300.2.1	Tomato	nucleus	72.15	62.67
PGSC0003DMT400020076	Potato	cytosol	71.71	62.64
VIT_13s0019g05000.t01	Wine grape	cytosol	74.56	51.13
KRH76261	Soybean	nucleus	71.71	48.81
GSMUA_Achr9P24460_001	Banana	cytosol	70.61	48.57
KRH65274	Soybean	cytosol	71.05	48.43
KXG19223	Sorghum	cytosol	67.32	46.94
CDY38041	Canola	nucleus	69.3	46.81
AT1G02010.4	Thale cress	cytosol, nucleus, peroxisome	71.27	46.23
TraesCS3A01G538700.1	Wheat	cytosol	64.91	45.05
TraesCS3B01G607200.1	Wheat	cytosol	64.91	45.05
TraesCS3D01G542100.1	Wheat	cytosol	64.91	45.05
Bra032660.1-P	Field mustard	cytosol	57.89	44.3
Zm00001d045434_P004	Maize	cytosol	66.89	44.27
HORVU3Hr1G117280.1	Barley	cytosol	64.69	43.51
Os06t0135900-01	Rice	plasma membrane	48.46	42.34
VIT_03s0038g00020.t01	Wine grape	cytosol	2.63	16.44
VIT_18s0001g15600.t01	Wine grape	cytosol	17.11	13.73
VIT_03s0038g03110.t01	Wine grape	cytosol	16.67	12.79
Solyc01g091290.2.1	Tomato	cytosol, unclear	1.75	4.3

Protein Annotations

ArrayExpress:VIT_15s0045g00060	EMBL:FN596510	EnsemblPlants:VIT_15s0045g00060.t01	EnsemblPlantsGene:VIT_15s0045g00060	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:Sec1-like	InterPro:Sec1-like_sf	PANTHER:PTHR11679
PANTHER:PTHR11679:SF59	PFAM:PF00995	PIRSF:PIRSF005715	ProteinID:CBI38044	ProteinID:CBI38044.3	SEG:seg
SUPFAM:SSF56815	UniParc:UPI0001BE4D84	UniProt:D7U5M5	MapMan:13.4.2.4	:	:

Description

No Description!

Coordinates

chr15:+:4604899..4611593

Molecular Weight (calculated)

51364.8 Da

IEP (calculated)

8.645

GRAVY (calculated)

-0.452

Length

456 amino acids

Sequence
(BLAST)

001: MYVFAYIQEL PLVRYRAAKT LDGSAVATFR DLVPTKLAAA VWNSLEKYKS TIPNFPQTGT CELLILDRSI DQIAPVIHEW TYDAMCHDLL DMDGNKYVHE
101: IPSKTGGEPE KKEVLLEDHD PVWLELRHVH IADASERLHD KMTNFVSKNK AAQLHQRDSN ELSTRDLQNQ ALPQYSEQME KLSLHVEIAG KINRTIREMG
201: LRDLGQLEQD LVFGDVGAKE VINFLRTKQD ATSENKLRLL MIYASVYPEK FEGDKGLKLT QLARLSPEDM KVVNNMRLLE GSSATKKKSS GGFSLKFDGQ
301: KVKNLSRFYP MIEELIEKLN KGELPKNEYL CMNEPSPPVP RSTDGASART SQAPASQPVK SRRTATWARS RVPDDGCSSD SVLKNVSVDF KNMGQRIFVF
401: IIGGATRSEL RVCHKLTAKL RREVVLGSSS IDDPPQFITK LKMLSEKGIS LDGIRI

Best Arabidopsis Sequence Match ( AT1G02010.5 )
(BLAST)

001: MLGSTKTGDS KAWKILIMDR VTVKVMSQSC KMADITDQGI SLVEELFKRR EPMPGMDAIY FIQPSKENIV MFLSDMSGRE PLYRKAFIFF SSTIPKELVN
101: HIKSDSSVLP RIGALREMNM EYFPIDNQGF LTDHEQALET LYAEDAENSR HFHICLNIMA TRIATVFASL KELPFVRYRA AKSTASRDLV PSKLAAAIWD
201: CISKYKAIPN FPQTETCELL IVDRSVDQIA PIIHEWTYDA MCHDLLDMEG NKHVIEVPSK TGGPPEKKEI VLEDHDPVWL ELRHTHIADA SERLHEKMTN
301: FASKNKAAQM RSRDGSELST RDLQKIVQAL PQYGEQVDKL STHVELAGKI NRIIRDTGLR DLGQLEQDLV FGDAGAKDVI NFLRTNQDTN PENKLRLLMI
401: YATVYPEKFE GDKGVKLMQL ARLSPVDMKV ISNMQLIAGS PENKAKSGSF SLKFDAGKTK QANRKDRSGE EETWQLFRFY PMIEELLEKL VKGDLSKSDY
501: LCMNQSSHKE ESEARTGSVR KSSAPTAVPE RKATPHSMRS RRTATWARPH SSDDGYSSDS VLKSASTEFK KLGQRIFVFI IGGATRSELR VCHKLTSSLR
601: REVVLGSTSF DDPPQYITKL KLLSEKDIQG APAQPFKPQY W

Arabidopsis Description

SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.