Factsheet for Os06t0135900-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
cytosol 3
golgi 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 28056797

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG19223	Sorghum	cytosol	89.46	71.41
TraesCS3D01G542100.1	Wheat	cytosol	86.02	68.34
TraesCS3B01G607200.1	Wheat	cytosol	86.02	68.34
TraesCS3A01G538700.1	Wheat	cytosol	85.82	68.19
Zm00001d045434_P004	Maize	cytosol	89.08	67.49
HORVU3Hr1G117280.1	Barley	cytosol	86.02	66.22
Os02t0452500-01	Rice	cytosol, plasma membrane	13.41	60.87
Bra032660.1-P	Field mustard	cytosol	64.56	56.54
GSMUA_Achr9P24460_001	Banana	cytosol	70.88	55.81
Solyc01g091290.2.1	Tomato	cytosol, unclear	19.73	55.38
VIT_15s0048g00970.t01	Wine grape	cytosol	63.03	53.24
Os04t0252400-01	Rice	plasma membrane	13.22	52.67
KRH65274	Soybean	cytosol	65.71	51.27
KRH76261	Soybean	nucleus	65.71	51.19
CDY38041	Canola	nucleus	64.94	50.22
VIT_15s0045g00060.t01	Wine grape	cytosol	42.34	48.46
AT1G02010.4	Thale cress	cytosol, nucleus, peroxisome	64.75	48.08
PGSC0003DMT400020076	Potato	cytosol	45.98	45.98
Solyc01g091300.2.1	Tomato	nucleus	45.59	45.33
Os02t0437800-02	Rice	cytosol, plasma membrane	17.82	16.4
Os03t0620800-01	Rice	plasma membrane	17.62	14.77

Protein Annotations

Gene3D:1.25.40.60	MapMan:13.4.2.4	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	ProteinID:BAF18636.1
ProteinID:BAS96028.1	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031
GO:GO:0016192	InterPro:IPR027482	EnsemblPlantsGene:Os06g0135900	EnsemblPlants:Os06t0135900-01	PFAM:PF00995	PIRSF:PIRSF005715
PANTHER:PTHR11679	PANTHER:PTHR11679:SF59	UniProt:Q0DET7	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	UniParc:UPI0000E1266D	:	:	:	:

Description

Similar to Sec1p-like protein 2 (Fragment). (Os06t0135900-01)

Coordinates

chr6:-:1900868..1908946

Molecular Weight (calculated)

59790.1 Da

IEP (calculated)

6.220

GRAVY (calculated)

-0.389

Length

522 amino acids

Sequence
(BLAST)

001: MSMSGSDFGA PCDDPKIFRN ICRDRILKDL LQPDKDKETK SSWKVLIMDK FTVRIMAYAC KMAEITDAGI SLVEDLFKRR EPMPSMDAIY FLQPLKENVI
101: MLLSDMSGRC PLYRKAYIFF SSPIPKELVS YIKNDSSVIP RIGALREMNL EFFAIDMQGF TTDHDMAFTD LYSAQHNSKK FNDTISTMAT RIATTFASLK
201: EFPCVRYRAP KGTDPMTTPK FDMVPKWLAT AVWDIVSKYK STIPEFPQKE TCELLIVDRP IDQIAPVIHE WTYDAMCHDL LEMDGQKYIY EVSKAGSEPE
301: RKEALLEDHD PLWVELRHIH IADASERLYD KMNNFVSKNK AAQLHSRDGG EISTKDLQKI VQALPQYGEQ VEKLTLHIEI AGKINKFIRE YGLRDIGQVE
401: QDLVFGDAAA KEVISILRSK QDMSPENKLR LLIIYAIVYP EKFEGDKGEK LMQLAKLPHD EMDAINSLRY LVGSDTKKAS RPGGFSLKFD AQKKKNAART
501: ERQDGDETWA LSRFFPLIEA FD

Best Arabidopsis Sequence Match ( AT1G02010.1 )
(BLAST)

001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW

Arabidopsis Description

SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.