Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G542100.1 | Wheat | cytosol | 99.7 | 99.7 |
| TraesCS3A01G538700.1 | Wheat | cytosol | 99.54 | 99.54 |
| HORVU3Hr1G117280.1 | Barley | cytosol | 96.65 | 93.66 |
| Os06t0135900-01 | Rice | plasma membrane | 68.34 | 86.02 |
| KXG19223 | Sorghum | cytosol | 83.71 | 84.1 |
| Zm00001d045434_P004 | Maize | cytosol | 83.26 | 79.39 |
| GSMUA_Achr9P24460_001 | Banana | cytosol | 66.36 | 65.76 |
| VIT_15s0048g00970.t01 | Wine grape | cytosol | 61.19 | 65.05 |
| VIT_15s0045g00060.t01 | Wine grape | cytosol | 45.05 | 64.91 |
| KRH76261 | Soybean | nucleus | 62.1 | 60.9 |
| TraesCS6B01G231900.1 | Wheat | nucleus | 61.34 | 60.88 |
| KRH65274 | Soybean | cytosol | 61.8 | 60.69 |
| Bra032660.1-P | Field mustard | cytosol | 54.49 | 60.07 |
| PGSC0003DMT400020076 | Potato | cytosol | 47.64 | 59.96 |
| CDY38041 | Canola | nucleus | 61.19 | 59.56 |
| Solyc01g091300.2.1 | Tomato | nucleus | 47.03 | 58.86 |
| TraesCS2B01G074400.1 | Wheat | nucleus | 58.75 | 57.96 |
| AT1G02010.4 | Thale cress | cytosol, nucleus, peroxisome | 61.95 | 57.89 |
| Solyc01g091290.2.1 | Tomato | cytosol, unclear | 15.98 | 56.45 |
| TraesCS2B01G277800.2 | Wheat | cytosol | 17.2 | 19.93 |
| TraesCS5B01G039900.1 | Wheat | cytosol, mitochondrion | 17.2 | 18.23 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G607200.1 | EnsemblPlantsGene:TraesCS3B01G607200 | Gene3D:3.40.50.2060 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF59 |
| PFAM:PF00995 | PIRSF:PIRSF005715 | SEG:seg | SUPFAM:SSF56815 | MapMan:13.4.2.4 | : |
Description
No Description!
Coordinates
chr3B:+:825950185..825957253
Molecular Weight (calculated)
74247.2 Da
IEP (calculated)
7.994
GRAVY (calculated)
-0.468
Length
657 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSGADFNG VGEDPRIFRN ICRDRILKDM LKPDKDKENK SAWKVLIMDK FTVRIMGYAC KMAEITDAGV SLVEDLFKRR EPMPSMDVIY FVQPLKENVI
101: MLLSDMSGRC PLYRKAYIFF SSPIPKELVT YIKNDSSVIP RIGALREMNL EFFAIDMQGF VTDHDMALTD LYGANDHNSK KFNDTISTMA CRIATTFASL
201: KEFPTVRYRA PKSANPSTAP KFDMVPKWLA NATWEIVSKY KSTIPEFPQK ETCELLILDR PIDQIAPVIH EWTYDAMCHD LLEMDGNKYI YEVSKGDSEP
301: EKKEALLEDQ DPLWIELRHT HIADASERLY EKMNTFVSKN KAAQLHSRDG GEISTTDLQR IVQALPQYGE QVDKLTLHID IAGKINRCIR EYGLRDLGQL
401: EQDLVFGDAG AKEVINMLRS KQNLSEENKL RLLIIYAIVC PDKFEGDKGD KLMQLAKLPS DDMKAINSLR YLVSSDAKKD ARAGGFSLKF DAQKKKNTGV
501: RTERQDGEEG WALSRFFPLI EELVEKLSKG ELPLNEYPAL SESSSTSQGT AEGASVPKPA QNPQPMSRRS RRTPQWAKGR NSDDSQSSDS SVLRHASGDF
601: KRLGNRIFVF MIGGATRSEL RVAHKLTMKL KREIVLGSSS IDNPPQFISK LKALGPS
101: MLLSDMSGRC PLYRKAYIFF SSPIPKELVT YIKNDSSVIP RIGALREMNL EFFAIDMQGF VTDHDMALTD LYGANDHNSK KFNDTISTMA CRIATTFASL
201: KEFPTVRYRA PKSANPSTAP KFDMVPKWLA NATWEIVSKY KSTIPEFPQK ETCELLILDR PIDQIAPVIH EWTYDAMCHD LLEMDGNKYI YEVSKGDSEP
301: EKKEALLEDQ DPLWIELRHT HIADASERLY EKMNTFVSKN KAAQLHSRDG GEISTTDLQR IVQALPQYGE QVDKLTLHID IAGKINRCIR EYGLRDLGQL
401: EQDLVFGDAG AKEVINMLRS KQNLSEENKL RLLIIYAIVC PDKFEGDKGD KLMQLAKLPS DDMKAINSLR YLVSSDAKKD ARAGGFSLKF DAQKKKNTGV
501: RTERQDGEEG WALSRFFPLI EELVEKLSKG ELPLNEYPAL SESSSTSQGT AEGASVPKPA QNPQPMSRRS RRTPQWAKGR NSDDSQSSDS SVLRHASGDF
601: KRLGNRIFVF MIGGATRSEL RVAHKLTMKL KREIVLGSSS IDNPPQFISK LKALGPS
001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
Arabidopsis Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.