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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • golgi 3
  • plastid 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:golgi, plastid
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
 unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400020076 Potato cytosol 97.14 97.7
VIT_15s0045g00060.t01 Wine grape cytosol 62.67 72.15
VIT_15s0048g00970.t01 Wine grape cytosol 71.24 60.52
KRH65274 Soybean cytosol 68.95 54.11
KRH76261 Soybean nucleus 68.38 53.58
CDY38041 Canola nucleus 67.05 52.15
AT1G02010.4 Thale cress cytosol, nucleus, peroxisome 69.14 51.64
Solyc08g079520.2.1 Tomato nucleus 65.33 51.5
GSMUA_Achr9P24460_001 Banana cytosol 64.57 51.13
Bra032660.1-P Field mustard cytosol 57.52 50.67
KXG19223 Sorghum cytosol 60.95 48.93
TraesCS3D01G542100.1 Wheat cytosol 58.86 47.03
TraesCS3B01G607200.1 Wheat cytosol 58.86 47.03
TraesCS3A01G538700.1 Wheat cytosol 58.86 47.03
Zm00001d045434_P004 Maize cytosol 60.76 46.3
Os06t0135900-01 Rice plasma membrane 45.33 45.59
HORVU3Hr1G117280.1 Barley cytosol 58.86 45.58
Solyc10g074510.1.1 Tomato cytosol 2.1 18.03
Solyc04g064820.2.1 Tomato cytosol, nucleus 15.81 14.61
Solyc10g074520.1.1 Tomato cytosol 8.19 14.24
Solyc01g112150.2.1 Tomato plastid 16.38 13.87
Solyc01g091290.2.1 Tomato cytosol, unclear 2.29 6.45
Protein Annotations
EnsemblPlants:Solyc01g091300.2.1EnsemblPlantsGene:Solyc01g091300.2GO:GO:0006810GO:GO:0006904GO:GO:0008150GO:GO:0009987
GO:GO:0016192InterPro:Sec1-likeInterPro:Sec1-like_sfncoils:CoilPANTHER:PTHR11679PANTHER:PTHR11679:SF59
PFAM:PF00995PIRSF:PIRSF005715SUPFAM:SSF56815UniParc:UPI00027681DAUniProt:K4AZ70MapMan:13.4.2.4
Description
Protein transport Sec1a [Source:Projected from Arabidopsis thaliana (AT1G02010) UniProtKB/Swiss-Prot;Acc:Q9C5P7]
Coordinates
chr1:+:84942240..84947943
Molecular Weight (calculated)
59403.6 Da
IEP (calculated)
8.122
GRAVY (calculated)
-0.625
Length
525 amino acids
Sequence
(BLAST)
001: MPIATFLICQ LLSQGFVTDH ERALGELFGE SAQNSRRAEA SLNVMASRIS TVFASLKEFP FVRYRASKGQ DGSTATNFRE LVAGKLAAAI WNNITTYKSS
101: IPNYPQKETC ELLILDRSVD QIAPVIHEWT YDAMCHDLLD MDGNKYIHEV PSKTGGSPEK KEVLLEDQDP VWLELRHTHI ADASERLHDR FTNFVSKNKA
201: AQMEQRDGSE LSTRDLQKMV QALPQYNEQK ERLSTHVEIA GELNKIIRDT GLRELGQLEQ DLVFGDAGTK EVIHYLRSKQ DTSGENKLRL MMIYASVYPE
301: KFEGDKAAKL MQLAKLSPED MKAVKNMRML EGSEKRKPSG SFSLKFDSQK KGNAARKDRT GEEETWQLFR FYPVIEELID KMCKGDLSKD DYQCMNSSQT
401: APREFNGSSA RNVPPKATTE STNPRSVRSR RTPNWARSRT SDDGYSSDSN LRNFSTDFKN MGQRIFVFII GGATRSELRV CHKLTAKLRR EVVLGTTSLD
501: DPPQYITKLK LLSEKEIAVD PGLGI
Best Arabidopsis Sequence Match ( AT1G02010.5 )
(BLAST)
001: MLGSTKTGDS KAWKILIMDR VTVKVMSQSC KMADITDQGI SLVEELFKRR EPMPGMDAIY FIQPSKENIV MFLSDMSGRE PLYRKAFIFF SSTIPKELVN
101: HIKSDSSVLP RIGALREMNM EYFPIDNQGF LTDHEQALET LYAEDAENSR HFHICLNIMA TRIATVFASL KELPFVRYRA AKSTASRDLV PSKLAAAIWD
201: CISKYKAIPN FPQTETCELL IVDRSVDQIA PIIHEWTYDA MCHDLLDMEG NKHVIEVPSK TGGPPEKKEI VLEDHDPVWL ELRHTHIADA SERLHEKMTN
301: FASKNKAAQM RSRDGSELST RDLQKIVQAL PQYGEQVDKL STHVELAGKI NRIIRDTGLR DLGQLEQDLV FGDAGAKDVI NFLRTNQDTN PENKLRLLMI
401: YATVYPEKFE GDKGVKLMQL ARLSPVDMKV ISNMQLIAGS PENKAKSGSF SLKFDAGKTK QANRKDRSGE EETWQLFRFY PMIEELLEKL VKGDLSKSDY
501: LCMNQSSHKE ESEARTGSVR KSSAPTAVPE RKATPHSMRS RRTATWARPH SSDDGYSSDS VLKSASTEFK KLGQRIFVFI IGGATRSELR VCHKLTSSLR
601: REVVLGSTSF DDPPQYITKL KLLSEKDIQG APAQPFKPQY W
Arabidopsis Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.