Factsheet for Solyc08g079520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g006950.2.1	plasma membrane
Solyc03g115470.2.1
Solyc06g053760.2.1
Solyc06g069570.2.1
Solyc10g081850.1.1	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12360.1	Solyc06g053760.2.1	AT1G08560.1	11157980
AT1G12360.1	Solyc01g006950.2.1	AT3G11820.1	23572542
AT1G12360.1	Solyc10g081850.1.1	AT3G11820.1	23572542
AT1G12360.1	Solyc01g006950.2.1	AT3G11820.1	23572542
AT1G12360.1	Solyc10g081850.1.1	AT3G11820.1	23572542
AT1G12360.1	Solyc03g115470.2.1	AT5G07880.1	11591731
AT1G12360.1	Solyc06g069570.2.1	AT5G07880.1	11591731
AT1G12360.1	Solyc03g115470.2.1	AT5G61210.1	11591731
AT1G12360.1	Solyc06g069570.2.1	AT5G61210.1	11591731

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26558	Canola	cytosol	20.57	86.16
VIT_13s0019g05000.t01	Wine grape	cytosol	80.03	80.15
Os02t0452500-01	Rice	cytosol, plasma membrane	13.81	80.0
CDY15993	Canola	cytosol	77.63	77.51
Bra026974.1-P	Field mustard	cytosol	77.18	77.18
AT1G12360.1	Thale cress	cytosol	77.18	77.18
CDY26559	Canola	cytosol	77.18	77.18
Bra019760.1-P	Field mustard	cytosol	73.42	76.65
CDX98070	Canola	cytosol	76.43	76.54
CDY30074	Canola	cytosol	76.28	76.05
KRH57307	Soybean	cytosol, nucleus	75.83	75.94
KRH04038	Soybean	cytosol	75.83	75.83
KRH28021	Soybean	nucleus	74.47	74.81
KRH77416	Soybean	cytosol	72.82	71.43
AT4G12120.1	Thale cress	cytosol	65.92	66.31
Solyc01g091300.2.1	Tomato	nucleus	51.5	65.33
CDY68111	Canola	cytosol	65.47	65.17
CDX90817	Canola	cytosol	65.32	65.02
Solyc01g091290.2.1	Tomato	cytosol, unclear	18.02	64.52
Bra029438.1-P	Field mustard	cytosol	63.66	64.34
Bra000761.1-P	Field mustard	cytosol	65.02	63.86
CDX86721	Canola	cytosol	63.06	63.73
CDX94488	Canola	cytosol	63.21	63.31
CDY49318	Canola	plastid	9.91	54.1
Bra038812.1-P	Field mustard	plastid	9.61	50.0
Solyc01g112150.2.1	Tomato	plastid	20.12	21.61
Solyc04g064820.2.1	Tomato	cytosol, nucleus	17.72	20.77
Solyc10g074520.1.1	Tomato	cytosol	7.21	15.89
Solyc10g074510.1.1	Tomato	cytosol	1.05	11.48

Protein Annotations

Gene3D:1.25.40.60	MapMan:13.4.2.4	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	UniProt:K4CNV2
PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF59	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2
InterPro:Sec1-like	InterPro:Sec1-like_sf	EnsemblPlantsGene:Solyc08g079520.2	EnsemblPlants:Solyc08g079520.2.1	UniParc:UPI000276B2F0	SEG:seg

Description

No Description!

Coordinates

chr8:+:63023768..63040202

Molecular Weight (calculated)

75731.8 Da

IEP (calculated)

8.341

GRAVY (calculated)

-0.500

Length

666 amino acids

Sequence
(BLAST)

001: MSMSDSDTSS QGSDYKNFRQ VIRDRLLYEM LRSAKSKDSK SAWKVLIMDK LTVKIMSYAC KMADITEEGV SLVEDIYKRR QPLPSMDAIY FIQPTKENVL
101: MFLSDMAGKS PLYRKAFVFF SSPIAKELVN HIKKDSSVLS RIGALREMNL EFFAIDSQGF TTDNERALEE LYGDDEGSRK GSLCLNEMAN RIATVFASLR
201: EFPLVRYRAA KSLDPTTMTT FRDLIPTKLA AGVWNSLTKY KSTLPHFPQT ETCELLIVDR SVDQIAPIIH EWTYDAMCHD LLNMDGNKYV HEVPGKAGGP
301: PEKKDVLLED HDPIWLELRH AHIADASERL HEKMTNFVSK NKAAQMHQGS RDGGQLSTRD LQKMVQSLPQ YSEQIEKLSL HVDIAGKLNR IIRESSLKEI
401: GQLEQDLVFG DAGTKDLINF LRVHQDVTRE SKLRLLMIYA SIHPEKFESD KLSKLMELAR LPQDDMNAVY NMRLLEGSTD HKKSSLGPFS LKFDVHKKRH
501: AARKDRTDQA STWQLSRFYP MIEELVEKLN KGELPKNDYP CMNDPSPTFH GTSQSASIQA NQVSTPHSMR SRRTATWARP RNSDDGYSSD SILRHASSDF
601: KKMGQRIFVF IVGGATRSEL RACHKLSTKL KREVVLGSSS IDDPPQFITK LKLLTADELS LDDLQI

Best Arabidopsis Sequence Match ( AT1G12360.1 )
(BLAST)

001: MSYSDSDSSS HGGEYKNFRQ ITRERLLYEM LRSAKTGSSK STWKVLIMDK LTVKIMSYAC KMADITQEGV SLVEDIFRRR QPLPSMDAIY FIQPTKENVI
101: MFLSDMSGKS PLYKKAFVFF SSPVSKELVG HIKKDSSVLP RIGALREMNL EFFAIDSQGF ITDHERALED LFGDEETSRK GDACLNVMAS RIATVFASLR
201: EFPAVRYRAA KSLDASTMTT LRDLIPTKLA AGIWNCLAKH KQSIENFPQT ETCELLILDR SIDQIAPVIH EWTYDAMCHD LLNMEGNKYV HVIPSKSGGQ
301: PEKKDVLLEE HDPIWLELRH AHIADASERL HDKMTNFLSK NKAAQLQGKR DGAELSTRDL QKMVQALPQY SEQIDKLSLH VEIARKLNDL IREQGLRELG
401: QLEQDLVFGD AGMKDVIKYL STQEEASREG KLRLLMILAT IYPEKFEGEK GQNLMKLAKL SSDDMTAVNN MSLLGSAVDA KKNTPGGFTL KFDLHKKKRA
501: VRKERQEEAA WQLSRFYPMI EELIEKLSKG ELPKEDFPCM NDPSPSFHGS TSLSSAASSS QGQAAQSMRS RRTPTWAKPR GSDDGYSSDS VLRHASSDFR
601: KMGQRIFVFI VGGATRSELK VCHKLSTKLK REVILGSTSL DDPPQFITKL KLLTANDDLS LDDLQI

Arabidopsis Description

KEUSNARE-interacting protein KEULE [Source:UniProtKB/Swiss-Prot;Acc:Q9C5X3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.