Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86721 | Canola | cytosol | 98.03 | 98.03 |
| AT4G12120.1 | Thale cress | cytosol | 88.62 | 88.22 |
| Bra000761.1-P | Field mustard | cytosol | 87.86 | 85.4 |
| Bra026974.1-P | Field mustard | cytosol | 68.13 | 67.42 |
| Bra038812.1-P | Field mustard | plastid | 13.05 | 67.19 |
| Bra019760.1-P | Field mustard | cytosol | 64.95 | 67.08 |
| VIT_13s0019g05000.t01 | Wine grape | cytosol | 65.55 | 64.96 |
| Solyc08g079520.2.1 | Tomato | nucleus | 64.34 | 63.66 |
| Os02t0452500-01 | Rice | cytosol, plasma membrane | 10.02 | 57.39 |
| Bra032660.1-P | Field mustard | cytosol | 51.9 | 57.38 |
| Bra008294.1-P | Field mustard | cytosol | 18.97 | 21.97 |
| Bra024484.1-P | Field mustard | cytosol | 18.51 | 19.15 |
| Bra032934.1-P | Field mustard | cytosol | 7.59 | 16.08 |
Protein Annotations
| EnsemblPlants:Bra029438.1 | EnsemblPlants:Bra029438.1-P | EnsemblPlantsGene:Bra029438 | Gene3D:3.40.50.2060 | GO:GO:0006810 | GO:GO:0006904 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 |
| PANTHER:PTHR11679:SF59 | PFAM:PF00995 | PIRSF:PIRSF005715 | SEG:seg | SUPFAM:SSF56815 | UniParc:UPI00025427E8 |
| UniProt:M4EKX1 | MapMan:13.4.2.4 | : | : | : | : |
Description
AT4G12120 (E=0.0) SEC1B, ATSEC1B | SEC1B; protein transporter
Coordinates
chrA09:+:18063602..18067431
Molecular Weight (calculated)
75116.3 Da
IEP (calculated)
8.655
GRAVY (calculated)
-0.451
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSDSGSYS NGGDHKSFRQ ITRERLLYEM LMPEKNGTPR KVLVLDKFTV KIMSSAAKMS EISQQGVSLV ELITRRRQPM TSFDAIYFIQ PSESNVNAFL
101: SDMTGKSPLY KKAFVFFSSP VSRSLVTLIR KDMRAMKRIS ALKEMNLEYI SMDIQGFVTN NENALEDLYS DEENHQRADA CLNVVAKRIA TVLASLKEYP
201: FVRYRGAKAL DASTMTTYRE LIPTKLAAGV WNCLARYKQT IEDFPQTETC ELLILDRSID QIAPLIHEWT YDAMCHDLLK MEGNKYTYEV PSNSGGDPEM
301: REVFLDEEDP IWVELRDVHI ADASERLHEK MTNFVSKNKA AQLKHSSKDF GDISTKDLTK VVHALPQYSE QIDKLSLHVE IARTINRTIM EQGLRELGKL
401: EQDLVFGDAG RKDVIKFLST NNVINQESKL RLMMILAAIY PKKFEGEKGR KMMELAKLSG DDVVAVNNLR LLGPVHTESK RSTTGSFSLK FDVLKKKRAA
501: RKDRVGETQT WQLSRFYPIV EELVEKLNKG HLPKQDYPCM NEPKPTFYSA SQSPSGSPVL PHSRRTPTWA RRHLSDDGYF SDSFLGRTSS GFKKKGQRIF
601: VFIVGGATRS ELRVCHKLTE KLDREVILGS SSFLDPQTFL TKMKQINEEE EISLDDIDI
101: SDMTGKSPLY KKAFVFFSSP VSRSLVTLIR KDMRAMKRIS ALKEMNLEYI SMDIQGFVTN NENALEDLYS DEENHQRADA CLNVVAKRIA TVLASLKEYP
201: FVRYRGAKAL DASTMTTYRE LIPTKLAAGV WNCLARYKQT IEDFPQTETC ELLILDRSID QIAPLIHEWT YDAMCHDLLK MEGNKYTYEV PSNSGGDPEM
301: REVFLDEEDP IWVELRDVHI ADASERLHEK MTNFVSKNKA AQLKHSSKDF GDISTKDLTK VVHALPQYSE QIDKLSLHVE IARTINRTIM EQGLRELGKL
401: EQDLVFGDAG RKDVIKFLST NNVINQESKL RLMMILAAIY PKKFEGEKGR KMMELAKLSG DDVVAVNNLR LLGPVHTESK RSTTGSFSLK FDVLKKKRAA
501: RKDRVGETQT WQLSRFYPIV EELVEKLNKG HLPKQDYPCM NEPKPTFYSA SQSPSGSPVL PHSRRTPTWA RRHLSDDGYF SDSFLGRTSS GFKKKGQRIF
601: VFIVGGATRS ELRVCHKLTE KLDREVILGS SSFLDPQTFL TKMKQINEEE EISLDDIDI
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
Arabidopsis Description
SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.