Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029438.1-P | Field mustard | cytosol | 98.03 | 98.03 |
| CDX94488 | Canola | cytosol | 95.6 | 94.74 |
| AT4G12120.1 | Thale cress | cytosol | 87.41 | 87.01 |
| CDY68111 | Canola | cytosol | 87.41 | 86.1 |
| CDX90817 | Canola | cytosol | 87.1 | 85.8 |
| CDY49318 | Canola | plastid | 14.87 | 80.33 |
| CDY15993 | Canola | cytosol | 67.68 | 66.87 |
| CDY26559 | Canola | cytosol | 67.37 | 66.67 |
| CDX98070 | Canola | cytosol | 67.22 | 66.62 |
| CDY30074 | Canola | cytosol | 67.37 | 66.47 |
| VIT_13s0019g05000.t01 | Wine grape | cytosol | 64.95 | 64.36 |
| Solyc08g079520.2.1 | Tomato | nucleus | 63.73 | 63.06 |
| CDY26558 | Canola | cytosol | 15.17 | 62.89 |
| Os02t0452500-01 | Rice | cytosol, plasma membrane | 9.86 | 56.52 |
| CDY38041 | Canola | nucleus | 56.9 | 55.56 |
| CDY70457 | Canola | cytosol | 12.75 | 23.46 |
| CDY38360 | Canola | cytosol | 18.97 | 21.97 |
| CDX79223 | Canola | cytosol, plastid | 2.12 | 21.21 |
| CDY39875 | Canola | cytosol | 10.47 | 21.1 |
| CDY13575 | Canola | cytosol | 17.45 | 20.07 |
| CDX79215 | Canola | cytosol | 12.44 | 19.81 |
| CDY29213 | Canola | cytosol | 17.75 | 19.44 |
| CDY63506 | Canola | cytosol | 17.6 | 19.27 |
| CDX79189 | Canola | cytosol | 7.74 | 18.55 |
| CDX79222 | Canola | cytosol, mitochondrion | 7.13 | 17.34 |
| CDY52165 | Canola | cytosol | 9.26 | 16.94 |
| CDY48989 | Canola | cytosol | 7.89 | 16.88 |
| CDY52164 | Canola | cytosol | 1.21 | 14.81 |
| CDY71507 | Canola | cytosol, golgi | 5.77 | 12.79 |
Protein Annotations
| EnsemblPlants:CDX86721 | EnsemblPlantsGene:GSBRNA2T00145422001 | Gene3D:3.40.50.2060 | GO:A0A078DBT4 | GO:GO:0006810 | GO:GO:0006904 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 |
| PANTHER:PTHR11679:SF59 | PFAM:PF00995 | PIRSF:PIRSF005715 | ProteinID:CDX86721 | ProteinID:CDX86721.1 | SEG:seg |
| SUPFAM:SSF56815 | UniParc:UPI0004EEEB4E | MapMan:13.4.2.4 | : | : | : |
Description
BnaA09g21110D
Coordinates
chrLK031847:+:127406..131464
Molecular Weight (calculated)
74974.1 Da
IEP (calculated)
8.325
GRAVY (calculated)
-0.445
Length
659 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSDSGSYS NGGDHKSFRQ ITRERLLYEM LMPEKNGTPM KVLVLDNFTL KIISSAAKMS EISQQGVSLV ELITRRRQPM TSFDAIFFIQ PTESNVNAFL
101: SDMTGKSPLY KKAFVFFSSP VSRSLVTLIR KDMRAMKRIS ALKEMNLEYI SMDIQGFVTN NENALEDLYS DEENHQRADE CLNVVAKRIA TVLASLKEYP
201: FVRYRGAKAL DASTMTTYRE LIPTKLAAGV WNCLARYKQT IEDFPQTETC ELLILDRSID QIAPLIHEWT YDAMCHDLLK MEGNKYTYEV PSNSGGDPEM
301: REVILDEEDP IWVELRDVHI ADASERLHEK MTNFVSKNKA AQLKHSSKDS GDISTKDLKK VVNALPQYSE QIDKLSLHVE IARTINRTIM EQGLRELGKL
401: EQDLVFGDAG RKDVIKFLST NNVINQESKL RLMMILAAIY PKKFEGEKGR KMMELAKLSG DDVVAVNNLR LLGPVHTESK RSTTGSFSLK FDVLKKKRAA
501: RKDRVGETQT WQLSRFFPIV EELVEKLNKG HLPKQDYPCM NEPKPTFNSA SQSPSGSPVL PHSRRTPTWA RRHLSDDGYF SDSFLGRTSS GFKKKGQRIF
601: VFIVGGATRS ELRVCHKLTE KLDREVILGS SSFLDPQTFL TKMKQINEEE EISLDDIDI
101: SDMTGKSPLY KKAFVFFSSP VSRSLVTLIR KDMRAMKRIS ALKEMNLEYI SMDIQGFVTN NENALEDLYS DEENHQRADE CLNVVAKRIA TVLASLKEYP
201: FVRYRGAKAL DASTMTTYRE LIPTKLAAGV WNCLARYKQT IEDFPQTETC ELLILDRSID QIAPLIHEWT YDAMCHDLLK MEGNKYTYEV PSNSGGDPEM
301: REVILDEEDP IWVELRDVHI ADASERLHEK MTNFVSKNKA AQLKHSSKDS GDISTKDLKK VVNALPQYSE QIDKLSLHVE IARTINRTIM EQGLRELGKL
401: EQDLVFGDAG RKDVIKFLST NNVINQESKL RLMMILAAIY PKKFEGEKGR KMMELAKLSG DDVVAVNNLR LLGPVHTESK RSTTGSFSLK FDVLKKKRAA
501: RKDRVGETQT WQLSRFFPIV EELVEKLNKG HLPKQDYPCM NEPKPTFNSA SQSPSGSPVL PHSRRTPTWA RRHLSDDGYF SDSFLGRTSS GFKKKGQRIF
601: VFIVGGATRS ELRVCHKLTE KLDREVILGS SSFLDPQTFL TKMKQINEEE EISLDDIDI
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
Arabidopsis Description
SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.