CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038812.1-P	Field mustard	plastid	81.15	77.34
CDY52164	Canola	cytosol	7.38	16.67
CDX90817	Canola	cytosol	83.61	15.25
CDY68111	Canola	cytosol	82.79	15.1
AT4G12120.1	Thale cress	cytosol	81.15	14.95
CDX94488	Canola	cytosol	81.15	14.89
CDX86721	Canola	cytosol	80.33	14.87
CDX98070	Canola	cytosol	54.1	9.92
Solyc08g079520.2.1	Tomato	nucleus	54.1	9.91
CDY30074	Canola	cytosol	53.28	9.73
CDY26559	Canola	cytosol	52.46	9.61
CDY15993	Canola	cytosol	52.46	9.6
VIT_13s0019g05000.t01	Wine grape	cytosol	51.64	9.47
CDY38041	Canola	nucleus	41.8	7.56
CDX79189	Canola	cytosol	11.48	5.09
CDY39875	Canola	cytosol	9.84	3.67
CDY29213	Canola	cytosol	13.93	2.82
CDY38360	Canola	cytosol	13.11	2.81
CDY13575	Canola	cytosol	13.11	2.79
CDY63506	Canola	cytosol	13.11	2.66
CDX79222	Canola	cytosol, mitochondrion	3.28	1.48
CDY26558	Canola	cytosol	0.82	0.63
CDY70457	Canola	cytosol	1.64	0.56
CDX79215	Canola	cytosol	1.64	0.48
CDY71507	Canola	cytosol, golgi	0.82	0.34
CDY48989	Canola	cytosol	0.82	0.32
CDY52165	Canola	cytosol	0.82	0.28
CDX79223	Canola	cytosol, plastid	0.0	0.0
Os02t0452500-01	Rice	cytosol, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDY49318	EnsemblPlantsGene:GSBRNA2T00092746001	Gene3D:3.40.50.1910	GO:A0A078IJR6	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	PANTHER:PTHR11679	PANTHER:PTHR11679:SF59	PFAM:PF00995	ProteinID:CDY49318	ProteinID:CDY49318.1
SUPFAM:SSF56815	UniParc:UPI0004EE96AA	UniProt:A0A078IJR6	MapMan:35.1	:	:

Description

BnaA07g01490DBnaA07g01490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJR6]

Coordinates

chrLK032824:+:112646..113391

Molecular Weight (calculated)

13713.2 Da

IEP (calculated)

6.956

GRAVY (calculated)

-0.409

Length

122 amino acids

Sequence
(BLAST)

001: MENVGVTPPF YSSPQSPSAS PVLPHSRRTP SWTRRHISDD GYFSDSVLGR TSSGFKKKGQ RIFVFIVGGA TIYEVLACHK LTENLDREVI LGSSSFLNPH
101: TFLTKMKQMN EEEEISLDDT YI

Best Arabidopsis Sequence Match ( AT4G12120.1 )
(BLAST)

001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI

Arabidopsis Description

SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.