Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 2
- golgi 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY49318 | Canola | plastid | 77.34 | 81.15 |
Bra000761.1-P | Field mustard | cytosol | 69.53 | 13.13 |
Bra029438.1-P | Field mustard | cytosol | 67.19 | 13.05 |
AT4G12120.1 | Thale cress | cytosol | 67.19 | 12.99 |
Bra019760.1-P | Field mustard | cytosol | 50.0 | 10.03 |
Solyc08g079520.2.1 | Tomato | nucleus | 50.0 | 9.61 |
Bra026974.1-P | Field mustard | cytosol | 49.22 | 9.46 |
VIT_13s0019g05000.t01 | Wine grape | cytosol | 48.44 | 9.32 |
Bra032660.1-P | Field mustard | cytosol | 14.84 | 3.19 |
Bra008294.1-P | Field mustard | cytosol | 12.5 | 2.81 |
Bra024484.1-P | Field mustard | cytosol | 13.28 | 2.67 |
Bra032934.1-P | Field mustard | cytosol | 0.78 | 0.32 |
Os02t0452500-01 | Rice | cytosol, plasma membrane | 0.0 | 0.0 |
Protein Annotations
EnsemblPlants:Bra038812.1 | EnsemblPlants:Bra038812.1-P | EnsemblPlantsGene:Bra038812 | Gene3D:3.40.50.1910 | GO:GO:0006810 | GO:GO:0006904 |
GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:IPR027482 | InterPro:Sec-1-like_dom2 | InterPro:Sec1-like |
InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF59 | PFAM:PF00995 | SUPFAM:SSF56815 | UniParc:UPI00025410FF |
UniProt:M4FCJ3 | MapMan:35.1 | : | : | : | : |
Description
AT4G12120 (E=1e-041) SEC1B, ATSEC1B | SEC1B; protein transporter
Coordinates
chrA07:+:1341281..1341946
Molecular Weight (calculated)
14405.5 Da
IEP (calculated)
10.082
GRAVY (calculated)
0.095
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MENVGVTPLF YSSPQSLSAS PVLPHSRRTP SWARRHISDD GYFSDSVLGR TSSAFKKKGQ RIFVFIVGGA TISEVLACHK LTEKLDREVI LGSSSFLNPH
101: TFLTVRNLCS LWIFVHLKAL FFCLWCKN
101: TFLTVRNLCS LWIFVHLKAL FFCLWCKN
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
Arabidopsis Description
SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.