Skip to main content
crop-pal logo
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • cytosol 2
  • golgi 1
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY49318 Canola plastid 77.34 81.15
Bra000761.1-P Field mustard cytosol 69.53 13.13
Bra029438.1-P Field mustard cytosol 67.19 13.05
AT4G12120.1 Thale cress cytosol 67.19 12.99
Bra019760.1-P Field mustard cytosol 50.0 10.03
Solyc08g079520.2.1 Tomato nucleus 50.0 9.61
Bra026974.1-P Field mustard cytosol 49.22 9.46
VIT_13s0019g05000.t01 Wine grape cytosol 48.44 9.32
Bra032660.1-P Field mustard cytosol 14.84 3.19
Bra008294.1-P Field mustard cytosol 12.5 2.81
Bra024484.1-P Field mustard cytosol 13.28 2.67
Bra032934.1-P Field mustard cytosol 0.78 0.32
Os02t0452500-01 Rice cytosol, plasma membrane 0.0 0.0
Protein Annotations
EnsemblPlants:Bra038812.1EnsemblPlants:Bra038812.1-PEnsemblPlantsGene:Bra038812Gene3D:3.40.50.1910GO:GO:0006810GO:GO:0006904
GO:GO:0008150GO:GO:0009987GO:GO:0016192InterPro:IPR027482InterPro:Sec-1-like_dom2InterPro:Sec1-like
InterPro:Sec1-like_sfPANTHER:PTHR11679PANTHER:PTHR11679:SF59PFAM:PF00995SUPFAM:SSF56815UniParc:UPI00025410FF
UniProt:M4FCJ3MapMan:35.1::::
Description
AT4G12120 (E=1e-041) SEC1B, ATSEC1B | SEC1B; protein transporter
Coordinates
chrA07:+:1341281..1341946
Molecular Weight (calculated)
14405.5 Da
IEP (calculated)
10.082
GRAVY (calculated)
0.095
Length
128 amino acids
Sequence
(BLAST)
001: MENVGVTPLF YSSPQSLSAS PVLPHSRRTP SWARRHISDD GYFSDSVLGR TSSAFKKKGQ RIFVFIVGGA TISEVLACHK LTEKLDREVI LGSSSFLNPH
101: TFLTVRNLCS LWIFVHLKAL FFCLWCKN
Best Arabidopsis Sequence Match ( AT4G12120.1 )
(BLAST)
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
Arabidopsis Description
SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.