Factsheet for AT4G12120.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029438.1-P	Field mustard	cytosol	88.22	88.62
CDY68111	Canola	cytosol	89.43	88.49
CDX90817	Canola	cytosol	88.97	88.04
CDX94488	Canola	cytosol	87.92	87.52
CDX86721	Canola	cytosol	87.01	87.41
Bra000761.1-P	Field mustard	cytosol	88.82	86.73
CDY49318	Canola	plastid	14.95	81.15
AT1G12360.1	Thale cress	cytosol	70.09	69.67
VIT_13s0019g05000.t01	Wine grape	cytosol	68.73	68.42
Bra038812.1-P	Field mustard	plastid	12.99	67.19
Solyc08g079520.2.1	Tomato	nucleus	66.31	65.92
Os02t0452500-01	Rice	cytosol, plasma membrane	10.88	62.61
AT1G02010.4	Thale cress	cytosol, nucleus, peroxisome	60.88	57.33
AT1G77140.1	Thale cress	cytosol	18.58	21.62
AT2G17980.1	Thale cress	mitochondrion	17.37	18.34
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	4.08	15.79

Protein Annotations

MapMan:13.4.2.4	Gene3D:3.40.50.2060	EntrezGene:826820	ProteinID:AEE83098.1	ArrayExpress:AT4G12120	EnsemblPlantsGene:AT4G12120
RefSeq:AT4G12120	TAIR:AT4G12120	RefSeq:AT4G12120-TAIR-G	EnsemblPlants:AT4G12120.1	TAIR:AT4G12120.1	EMBL:AY088783
Unigene:At.33504	ProteinID:CAB40953.1	ProteinID:CAB78255.1	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0016020
GO:GO:0016192	RefSeq:NP_567388.1	PFAM:PF00995	PIRSF:PIRSF005715	PO:PO:0000005	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR11679	PANTHER:PTHR11679:SF59	UniProt:Q9SZ77
Symbol:SEC1B	SUPFAM:SSF56815	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0000162A1E	SEG:seg

Description

SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]

Coordinates

chr4:-:7256522..7261180

Molecular Weight (calculated)

75422.0 Da

IEP (calculated)

8.250

GRAVY (calculated)

-0.400

Length

662 amino acids

Sequence
(BLAST)

001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.