Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 4
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29213 | Canola | cytosol | 87.24 | 90.86 |
| CDY63506 | Canola | cytosol | 86.92 | 90.53 |
| Bra024484.1-P | Field mustard | cytosol | 90.43 | 89.01 |
| AT4G31740.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 22.17 | 81.29 |
| PGSC0003DMT400038058 | Potato | cytosol | 79.11 | 80.0 |
| VIT_03s0038g03110.t01 | Wine grape | cytosol | 75.12 | 79.29 |
| PGSC0003DMT400043339 | Potato | cytosol | 41.47 | 79.27 |
| Solyc01g112150.2.1 | Tomato | plastid | 78.31 | 79.19 |
| KRH58359 | Soybean | endoplasmic reticulum | 77.35 | 77.97 |
| KRH42240 | Soybean | endoplasmic reticulum, nucleus | 76.71 | 77.33 |
| GSMUA_Achr3P26940_001 | Banana | cytosol | 61.08 | 67.67 |
| EES06083 | Sorghum | cytosol, endoplasmic reticulum, mitochondrion, plastid | 64.11 | 64.22 |
| TraesCS5D01G045800.1 | Wheat | plastid | 63.32 | 64.03 |
| TraesCS5B01G039900.1 | Wheat | cytosol, mitochondrion | 63.32 | 64.03 |
| TraesCS5A01G038500.1 | Wheat | cytosol, mitochondrion | 63.32 | 63.83 |
| Zm00001d051824_P001 | Maize | plasma membrane | 63.0 | 62.9 |
| Os03t0620800-01 | Rice | plasma membrane | 62.2 | 62.6 |
| HORVU5Hr1G009740.2 | Barley | cytosol, mitochondrion | 63.16 | 61.78 |
| OQU91892 | Sorghum | cytosol, mitochondrion | 60.77 | 61.06 |
| Zm00001d030527_P001 | Maize | cytosol, mitochondrion | 59.65 | 60.23 |
| Zm00001d005839_P001 | Maize | cytosol, golgi, plastid | 40.51 | 52.16 |
| AT1G77140.1 | Thale cress | cytosol | 18.18 | 20.04 |
| AT1G12360.1 | Thale cress | cytosol | 19.14 | 18.02 |
| AT4G12120.1 | Thale cress | cytosol | 18.34 | 17.37 |
| AT1G02010.4 | Thale cress | cytosol, nucleus, peroxisome | 18.34 | 16.36 |
Protein Annotations
| Gene3D:1.25.40.60 | Gene3D:3.40.50.1910 | Gene3D:3.40.50.2060 | Gene3D:3.90.830.10 | MapMan:35.1 | EntrezGene:816310 |
| UniProt:A0A178VQN7 | ProteinID:AAD20128.1 | ProteinID:AEC06711.1 | ArrayExpress:AT2G17980 | EnsemblPlantsGene:AT2G17980 | RefSeq:AT2G17980 |
| TAIR:AT2G17980 | RefSeq:AT2G17980-TAIR-G | EnsemblPlants:AT2G17980.1 | TAIR:AT2G17980.1 | Symbol:ATSLY1 | EMBL:AY050414 |
| EMBL:AY059659 | Unigene:At.13550 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016192 | InterPro:IPR027482 | RefSeq:NP_179389.1 | ProteinID:OAP07202.1 | PFAM:PF00995 |
| PIRSF:PIRSF005715 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF60 | UniProt:Q9SL48 | SUPFAM:SSF56815 | InterPro:Sec-1-like_dom2 |
| InterPro:Sec1-like | InterPro:Sec1-like_sf | UniParc:UPI0000135A3C | SEG:seg | : | : |
Description
SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
Coordinates
chr2:+:7824166..7826623
Molecular Weight (calculated)
69154.8 Da
IEP (calculated)
6.342
GRAVY (calculated)
-0.254
Length
627 amino acids
Sequence
(BLAST)
(BLAST)
001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.