Factsheet for Zm00001d005839_P001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, cytosol

Predictor Summary:

mitochondrion 2
cytosol 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid
Any Predictor:	cytosol, golgi, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030527_P001	Maize	cytosol, mitochondrion	78.85	61.84
OQU91892	Sorghum	cytosol, mitochondrion	75.36	58.81
TraesCS5D01G045800.1	Wheat	plastid	71.46	56.13
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	71.46	56.13
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	71.25	55.79
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	71.25	54.13
Os03t0620800-01	Rice	plasma membrane	67.97	53.13
Zm00001d051824_P001	Maize	plasma membrane	67.56	52.39
CDY48989	Canola	cytosol	29.98	47.4
Bra032934.1-P	Field mustard	cytosol	30.18	47.27
CDY52165	Canola	cytosol	32.65	44.17
VIT_03s0038g03110.t01	Wine grape	cytosol	52.57	43.1
GSMUA_Achr3P26940_001	Banana	cytosol	49.49	42.58
KRH58359	Soybean	endoplasmic reticulum	54.21	42.44
Solyc01g112150.2.1	Tomato	plastid	53.8	42.26
KRH42240	Soybean	endoplasmic reticulum, nucleus	53.8	42.12
PGSC0003DMT400038058	Potato	cytosol	53.39	41.94
CDY63506	Canola	cytosol	50.51	40.86
CDY29213	Canola	cytosol	50.31	40.7
AT2G17980.1	Thale cress	mitochondrion	52.16	40.51
Bra024484.1-P	Field mustard	cytosol	52.36	40.03
PGSC0003DMT400043339	Potato	cytosol	24.64	36.59
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.73	36.26
CDY39875	Canola	cytosol	19.1	28.44
CDY52164	Canola	cytosol	1.44	12.96
Zm00001d004159_P003	Maize	cytosol, plastid	17.25	12.5
Zm00001d015890_P002	Maize	cytosol	16.84	12.06
Zm00001d049522_P001	Maize	cytosol, plasma membrane	15.4	11.85
Zm00001d045434_P004	Maize	cytosol	15.81	11.18

Protein Annotations

Gene3D:1.25.40.60	Gene3D:3.40.50.1910	Gene3D:3.90.830.10	MapMan:35.1	UniProt:A0A1D6ER71	InterPro:ARM-type_fold
InterPro:Clathrin/coatomer_adapt-like_N	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006904	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:0016020	GO:GO:0016192	GO:GO:0030117	InterPro:IPR027482
ProteinID:ONM22235.1	PFAM:PF00995	PFAM:PF01602	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF48371
SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	TMHMM:TMhelix	UniParc:UPI0008440476
EnsemblPlantsGene:Zm00001d005839	EnsemblPlants:Zm00001d005839_P001	EnsemblPlants:Zm00001d005839_T001	SEG:seg	:	:

Description

SEC1 family transport protein SLY1

Coordinates

chr2:-:190535752..190538683

Molecular Weight (calculated)

53824.0 Da

IEP (calculated)

7.167

GRAVY (calculated)

-0.017

Length

487 amino acids

Sequence
(BLAST)

001: MNQLSIKNEN QLIPLAVGFS FRHGSDGRFL LAAIRYSDSV CDLFSLAQPR AYVALNDPAA ADADITALVD AVALGLFCIV ATLGVVPVIS CARGGPAEMV
101: AGALDARLRD HLLAKPNLFT EAASAAVTSF QRPVLCLFDR NFELSVGVQH DWSYRPLVHD VLGLKKNKLK LPAEKYELDD SDKFWVANNW SSFPKVAEEI
201: EAQLAKYKQD VDEVNQHTGG GKVGVEFDGT DLLGNTKHLM NAVNSLPELT ERKNMIDKHT NIATSLLGHI KERSLDGYCS CENDMLVSGT VDRNTLLSLI
301: RGKGTKEDKL RLAVTYLLSF ATPPSSELEQ YVKRIKALLN TQFAAASGTA TKSNIVDWAE KLYGQSIGAV KNLLSDGRQL ALTRTVEALM EGKPNPEVLL
401: EFKEYATEVN VDFVRKVVRA IGRCAIKLER AAERCISVLL ELIKIKVNYV VQEAIIVIKD IFRRYPNTYE SIIATLCESR FVKVWTL

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.