Factsheet for PGSC0003DMT400043339

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 2
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038058	Potato	cytosol	92.38	48.87
VIT_03s0038g03110.t01	Wine grape	cytosol	83.54	46.13
KRH42240	Soybean	endoplasmic reticulum, nucleus	84.76	44.69
KRH58359	Soybean	endoplasmic reticulum	84.45	44.53
CDY29213	Canola	cytosol	80.79	44.02
CDY63506	Canola	cytosol	80.49	43.85
Bra024484.1-P	Field mustard	cytosol	80.79	41.6
AT2G17980.1	Thale cress	mitochondrion	79.27	41.47
GSMUA_Achr3P26940_001	Banana	cytosol	69.21	40.11
CDY48989	Canola	cytosol	34.15	36.36
Bra032934.1-P	Field mustard	cytosol	34.45	36.33
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	63.41	33.23
Zm00001d051824_P001	Maize	plasma membrane	61.89	32.32
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	60.37	31.94
TraesCS5D01G045800.1	Wheat	plastid	60.37	31.94
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	60.37	31.83
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	60.37	30.89
Os03t0620800-01	Rice	plasma membrane	58.23	30.66
Zm00001d030527_P001	Maize	cytosol, mitochondrion	57.01	30.11
OQU91892	Sorghum	cytosol, mitochondrion	56.71	29.81
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	36.59	24.64
PGSC0003DMT400020076	Potato	cytosol	9.45	5.94
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400043339	EnsemblPlantsGene:PGSC0003DMG400016827	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	ncoils:Coil	PANTHER:PTHR11679	PANTHER:PTHR11679:SF2	PFAM:PF00995	PGSC:PGSC0003DMG400016827
SUPFAM:SSF56815	UniParc:UPI0002968368	UniProt:M1BEG7	MapMan:35.1	:	:

Description

ATSLY1 [Source:PGSC_GENE;Acc:PGSC0003DMG400016827]

Coordinates

chr10:-:48083953..48087227

Molecular Weight (calculated)

37559.1 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.226

Length

328 amino acids

Sequence
(BLAST)

001: MALNLRQKHT ECITRMLNLN QPVNAGGTAN EEVYKILIYD RFCQDILSPL IHVKDLRKHG VTLYFLIDKD RKPVHDVPAV YFVQPTHLNV QRIISDASSS
101: LYDSFHLNFS SSIPRPLLED LASGTINSES IERIAKVHDQ YLEFVTLEDN LFSLAYKNCY LQLNDPSAGD KEIDEIVEKI VSGLFSVLAT LAVVPVIRCP
201: RGGPAEMVAS LLDQRLRDHL LAKNNLFSEG ANFTSSFQRP VLCLFDRNFE LSVAIQHDFR YRPLVHDMLG LRLNRLNVQE DKGGMKSYEL DKSDPFWMAN
301: WSLEFPEVAV EIESQLRKYK KDVEEVNK

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.