CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63506	Canola	cytosol	99.0	99.0
Bra024484.1-P	Field mustard	cytosol	100.0	94.51
AT2G17980.1	Thale cress	mitochondrion	90.86	87.24
PGSC0003DMT400043339	Potato	cytosol	44.02	80.79
VIT_03s0038g03110.t01	Wine grape	cytosol	77.57	78.62
PGSC0003DMT400038058	Potato	cytosol	79.9	77.58
Solyc01g112150.2.1	Tomato	plastid	79.07	76.77
KRH58359	Soybean	endoplasmic reticulum	79.24	76.69
KRH42240	Soybean	endoplasmic reticulum, nucleus	78.41	75.88
GSMUA_Achr3P26940_001	Banana	cytosol	63.95	68.02
CDY52164	Canola	cytosol	5.81	64.81
CDY39875	Canola	cytosol	34.05	62.69
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	64.78	62.3
CDY52165	Canola	cytosol	37.21	62.22
TraesCS5D01G045800.1	Wheat	plastid	63.29	61.45
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	63.29	61.45
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	63.29	61.25
Zm00001d051824_P001	Maize	plasma membrane	63.29	60.67
Os03t0620800-01	Rice	plasma membrane	61.96	59.87
OQU91892	Sorghum	cytosol, mitochondrion	61.79	59.62
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	63.46	59.59
CDY48989	Canola	cytosol	30.4	59.42
Zm00001d030527_P001	Maize	cytosol, mitochondrion	60.3	58.45
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	40.7	50.31
CDX79223	Canola	cytosol, plastid	2.66	24.24
CDY26558	Canola	cytosol	6.31	23.9
CDY70457	Canola	cytosol	12.62	21.23
CDY38360	Canola	cytosol	18.27	19.33
CDX79215	Canola	cytosol	13.29	19.32
CDY15993	Canola	cytosol	19.77	17.84
CDX86721	Canola	cytosol	19.44	17.75
CDY26559	Canola	cytosol	19.6	17.72
CDY30074	Canola	cytosol	19.44	17.52
CDY13575	Canola	cytosol	16.45	17.28
CDX98070	Canola	cytosol	18.94	17.14
CDX94488	Canola	cytosol	18.94	17.14
CDY38041	Canola	nucleus	18.6	16.59
CDX90817	Canola	cytosol	18.44	16.59
CDY68111	Canola	cytosol	18.44	16.59
CDX79189	Canola	cytosol	6.81	14.91
CDY49318	Canola	plastid	2.82	13.93
CDX79222	Canola	cytosol, mitochondrion	5.65	12.55
CDY71507	Canola	cytosol, golgi	6.15	12.46

Protein Annotations

Gene3D:1.25.40.60	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1	GO:A0A078GX76
UniProt:A0A078GX76	EnsemblPlants:CDY29213	ProteinID:CDY29213	ProteinID:CDY29213.1	ncoils:Coil	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00042126001	InterPro:IPR027482
PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2
InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0004EF3473	SEG:seg	:	:

Description

BnaA06g25440DBnaA06g25440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX76]

Coordinates

chrLK032233:+:276196..278550

Molecular Weight (calculated)

66421.8 Da

IEP (calculated)

6.261

GRAVY (calculated)

-0.224

Length

602 amino acids

Sequence
(BLAST)

001: MALNLRQKQT ECIIRMLNLN QPLKQSGTAN EEVYKILIYD KFCQNILSPL IHVKDLRKHG VTLYFLIDKD RKTVRDVPAV YFVQPTHSNI HRIISDASQA
101: LYDTFHLNFS SSIPRPLLED LASGTLKSGS VEKVSKVYDQ YLEFVTLEDN LFSLAQQNTY VQLNDPKAVE KDIEAIIERV VNGLFCVLVT LGVVPVIRCP
201: SGGGPAEMVA SLLDQKLRDH LLSKNNMFAE GGGFMSSFQR PLLCIFDRNF ELSVGIQHDF RYRPLVHDVL GLKLNRLNVQ GEKGGMKSFE LDSSDPFWSA
301: NSSLEFPEVA VEIETQLNKY KRDVEEVNKR TGGGSGAEFD GTDLIGNTKH LMNAVNSLPE LTERKQVIDK HTNIATALLG QIKERSIDAF TKKESDMMMR
401: GGIDRAELMA ALKGKGTKMD KLRFAIMYLI STETINQSEV ESVEAALNEA GADTSARSNI VDWAEKLYGQ SISAVTAGVK NLLSSDQQLA VTRTVEALTE
501: GKPNPEFDSY LLLDPRAPKP SSGGGSHVKG PFREAMVFMI GGGNYVEYGS LQELTQRQLT VKNVIYGATE ILTGSELVEQ LGLLGKKMGL GGPVASSSSS
601: GH

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.