Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90817 | Canola | cytosol | 98.65 | 98.65 |
| AT4G12120.1 | Thale cress | cytosol | 88.49 | 89.43 |
| CDX86721 | Canola | cytosol | 86.1 | 87.41 |
| CDX94488 | Canola | cytosol | 86.85 | 87.37 |
| CDY49318 | Canola | plastid | 15.1 | 82.79 |
| CDY26558 | Canola | cytosol | 16.29 | 68.55 |
| CDY15993 | Canola | cytosol | 67.26 | 67.47 |
| CDY26559 | Canola | cytosol | 66.82 | 67.12 |
| CDX98070 | Canola | cytosol | 66.37 | 66.77 |
| CDY30074 | Canola | cytosol | 66.07 | 66.17 |
| VIT_13s0019g05000.t01 | Wine grape | cytosol | 65.32 | 65.71 |
| Solyc08g079520.2.1 | Tomato | nucleus | 65.17 | 65.47 |
| Os02t0452500-01 | Rice | cytosol, plasma membrane | 10.61 | 61.74 |
| CDY38041 | Canola | nucleus | 57.25 | 56.74 |
| CDY70457 | Canola | cytosol | 12.56 | 23.46 |
| CDY38360 | Canola | cytosol | 18.39 | 21.62 |
| CDX79223 | Canola | cytosol, plastid | 2.09 | 21.21 |
| CDY13575 | Canola | cytosol | 17.04 | 19.9 |
| CDY39875 | Canola | cytosol | 9.42 | 19.27 |
| CDX79215 | Canola | cytosol | 11.81 | 19.08 |
| CDY29213 | Canola | cytosol | 16.59 | 18.44 |
| CDX79189 | Canola | cytosol | 7.47 | 18.18 |
| CDY63506 | Canola | cytosol | 16.29 | 18.11 |
| CDY52164 | Canola | cytosol | 1.35 | 16.67 |
| CDY52165 | Canola | cytosol | 8.97 | 16.67 |
| CDY48989 | Canola | cytosol | 7.32 | 15.91 |
| CDX79222 | Canola | cytosol, mitochondrion | 6.43 | 15.87 |
| CDY71507 | Canola | cytosol, golgi | 5.08 | 11.45 |
Protein Annotations
| Gene3D:1.25.40.60 | MapMan:13.4.2.4 | Gene3D:3.40.50.1910 | Gene3D:3.40.50.2060 | Gene3D:3.90.830.10 | GO:A0A078JR08 |
| UniProt:A0A078JR08 | EnsemblPlants:CDY68111 | ProteinID:CDY68111 | ProteinID:CDY68111.1 | GO:GO:0006810 | GO:GO:0006904 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00069273001 | InterPro:IPR027482 | PFAM:PF00995 |
| PIRSF:PIRSF005715 | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF59 | SUPFAM:SSF56815 | InterPro:Sec-1-like_dom2 | InterPro:Sec1-like |
| InterPro:Sec1-like_sf | UniParc:UPI0004EEFBA4 | SEG:seg | : | : | : |
Description
BnaCnng57670DBnaCnng57670D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JR08]
Coordinates
chrLK036867:-:2182..6839
Molecular Weight (calculated)
76356.7 Da
IEP (calculated)
7.180
GRAVY (calculated)
-0.430
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSDSGSSS NGGDYKTFRQ ITRERLLYEM LRPESSKSTW KVLVVDELTV KILSSACKMS EFTQQGISLV EIITKQRQPM TSMEAIYFIQ PTEANVNAFL
101: SDMTGQSPLY KKAFVFFSSP VSRSLVTLIR KDMKAMKRIG ALKEMNLEYI SLDSQGFITN NENALEDLYS DEENHQRADA CLNVVAKRIA TVLASLKEYP
201: FVRYRGAKGL DATTMTTYRE LIPTKLAASV WNCLTKYKQT IEDFPQTETC ELLILDRSID QIAPLIHEWT YDAMCHDLLK MEGNKYTHEV PSKTGDNTEK
301: KEVLLDEEDP IWVELRDVHI ADASERLHEK MTNFVSKNKA AQLKQSSKYE PIEFFLLIDF GDLSSKDLQK MVHALPQYSE QIDKLSLHVD IARTINRTIM
401: EQGLRELGQL EQDLVFGDAG RKDVIKFLST NNDINQESKL RLMMIFAEIY PKKFAGEKGR KMMELAKLSG DDVVAVNNLR LLGPVHTECK SSTTGSFPLK
501: FDVLKTKRAA RRDRVGDTQT WMLSRFYPII EELVEKLNKG HLPKQDYPCM NEPRPTFYSS SQSPSASPVL PHSRRTPSWA RRHLSDDGYF SDSVLGRASS
601: CIKKKGRRIF VFIVGGATRS ELRACHKLTE KLDREIILGS SSFLDPHTFL TKMKQMNEEE EISLDDIDI
101: SDMTGQSPLY KKAFVFFSSP VSRSLVTLIR KDMKAMKRIG ALKEMNLEYI SLDSQGFITN NENALEDLYS DEENHQRADA CLNVVAKRIA TVLASLKEYP
201: FVRYRGAKGL DATTMTTYRE LIPTKLAASV WNCLTKYKQT IEDFPQTETC ELLILDRSID QIAPLIHEWT YDAMCHDLLK MEGNKYTHEV PSKTGDNTEK
301: KEVLLDEEDP IWVELRDVHI ADASERLHEK MTNFVSKNKA AQLKQSSKYE PIEFFLLIDF GDLSSKDLQK MVHALPQYSE QIDKLSLHVD IARTINRTIM
401: EQGLRELGQL EQDLVFGDAG RKDVIKFLST NNDINQESKL RLMMIFAEIY PKKFAGEKGR KMMELAKLSG DDVVAVNNLR LLGPVHTECK SSTTGSFPLK
501: FDVLKTKRAA RRDRVGDTQT WMLSRFYPII EELVEKLNKG HLPKQDYPCM NEPRPTFYSS SQSPSASPVL PHSRRTPSWA RRHLSDDGYF SDSVLGRASS
601: CIKKKGRRIF VFIVGGATRS ELRACHKLTE KLDREIILGS SSFLDPHTFL TKMKQMNEEE EISLDDIDI
001: MSFSDSGSSS YGGEYKNFRQ ITRERLLCEM LRPERNGSSK LTWKVLVMDK FTVKIMSSAC KMSEITQEGI SLVEVITKHR QPMTAMEVIY FIQPTEENVT
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
101: AFLSDMTGKS PLYKKAFVFF SSPVSRSLVN LIKKDMRAMK RIGGLKEMNL EYISMDIQGF VTNNENALEE LFCDDENHQR ADACLNVVAK RIATVLASLK
201: EYPFVRYRGA KALDATTMTT YRELIPTKLA ASVWNCLARY KQTIEDFPQT ETCELLILDR SIDQIAPLIH EWTYDAMCHD LLNMEGNKYT HEVPSKTGDK
301: PEKKEVLLDE EDSIWVELRD AHIADASERL HEKMTNFVSK NKAAQLKHSS KDFGDLSSKD LQKMVHALPQ YSEQIDKLSL HVEIARTINR TIMEQGLRDL
401: GQLEQDLVFG DAGRKDVIKF LSTNHIISHE SKLRLIMIVA AIYPKKFEGE KGRKMMELAK LSGDDVVAVN NMRLLGPVHT ECKKSTTGSF PLKFDVLKTK
501: RAARRDRVGE TQTWQLSRFY PIVEELVEKL SKGHLPKQDY PCMNEPKPTF YSGSLSPSAS PVLPHSRRTP TWARRHLSDD GYFSDSVLGR ASSGFKRKGQ
601: RIFVFIVGGA TRSELRVCHK LTEKLDREVI LGSSSFLDPL TFLTKMKQLN EEEEISLDDI VI
Arabidopsis Description
SEC1BProtein transport Sec1b [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ77]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.