Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79223 | Canola | cytosol, plastid | 12.32 | 77.27 |
| CDY70457 | Canola | cytosol | 61.11 | 70.67 |
| AT1G77140.1 | Thale cress | cytosol | 88.89 | 64.67 |
| CDY38360 | Canola | cytosol | 88.41 | 64.32 |
| VIT_18s0001g15600.t01 | Wine grape | cytosol | 78.5 | 57.22 |
| Solyc04g064820.2.1 | Tomato | cytosol, nucleus | 77.29 | 56.34 |
| KRH64544 | Soybean | endoplasmic reticulum | 76.81 | 55.99 |
| KRH53395 | Soybean | cytosol | 76.57 | 55.81 |
| CDX79189 | Canola | cytosol | 36.47 | 54.91 |
| CDY13575 | Canola | cytosol | 74.15 | 53.58 |
| GSMUA_Achr10P... | Banana | cytosol | 72.95 | 53.45 |
| TraesCS2A01G264300.1 | Wheat | cytosol | 69.81 | 50.97 |
| TraesCS2B01G277800.2 | Wheat | cytosol | 69.81 | 50.97 |
| TraesCS2D01G259600.1 | Wheat | cytosol | 69.81 | 50.97 |
| Os02t0437800-02 | Rice | cytosol, plasma membrane | 69.32 | 50.62 |
| EES13788 | Sorghum | cytosol | 69.32 | 50.62 |
| CDX79222 | Canola | cytosol, mitochondrion | 31.4 | 47.97 |
| Zm00001d049522_P001 | Maize | cytosol, plasma membrane | 71.26 | 46.6 |
| HORVU2Hr1G062800.7 | Barley | cytosol, plastid | 69.81 | 46.02 |
| CDY71507 | Canola | cytosol, golgi | 29.47 | 41.08 |
| CDY26558 | Canola | cytosol | 7.97 | 20.75 |
| CDY39875 | Canola | cytosol | 12.32 | 15.6 |
| CDY48989 | Canola | cytosol | 11.35 | 15.26 |
| CDY52165 | Canola | cytosol | 12.08 | 13.89 |
| CDY63506 | Canola | cytosol | 19.32 | 13.29 |
| CDY29213 | Canola | cytosol | 19.32 | 13.29 |
| CDY26559 | Canola | cytosol | 20.29 | 12.61 |
| CDY15993 | Canola | cytosol | 20.29 | 12.59 |
| CDX94488 | Canola | cytosol | 20.05 | 12.48 |
| CDX86721 | Canola | cytosol | 19.81 | 12.44 |
| CDY30074 | Canola | cytosol | 20.05 | 12.43 |
| CDX98070 | Canola | cytosol | 19.81 | 12.33 |
| CDX90817 | Canola | cytosol | 19.32 | 11.96 |
| CDY68111 | Canola | cytosol | 19.08 | 11.81 |
| CDY38041 | Canola | nucleus | 18.36 | 11.26 |
| CDY49318 | Canola | plastid | 0.48 | 1.64 |
| CDY52164 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX79215 | EnsemblPlantsGene:GSBRNA2T00131808001 | Gene3D:3.40.50.1910 | Gene3D:3.40.50.2060 | GO:A0A078CQT8 | GO:GO:0006810 |
| GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:IPR027482 | InterPro:Sec-1-like_dom2 |
| InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF3 | PFAM:PF00995 | ProteinID:CDX79215 |
| ProteinID:CDX79215.1 | SEG:seg | SUPFAM:SSF56815 | UniParc:UPI0004EE3D9F | MapMan:22.7.7.1 | : |
Description
BnaC06g20880D
Coordinates
chrLK031817:+:358482..361348
Molecular Weight (calculated)
47068.3 Da
IEP (calculated)
8.549
GRAVY (calculated)
-0.121
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSENV QKLRYQLANP RFGEHHLFFS
101: NLLKDTQIHI LADSDEHEAV QQVQEFYADF VAGDPYHLTL NMASNHLYML PAVVDPSGLQ RYSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: AMVHELIGLQ DNKVDLRSIG SLPKDQQVVI ILQYQEMARF VDNYPEYKKM QGNVSKHATL VTEMSKLVKA RRLMLVSQTE QDLACNGGQG AAYEAVTDLL
301: NNESVSDIDR LRLVMLYALR YEKENPVQLM QLFNKLASRS PKYKPGWIMI CSSATTILVS SSLVQVLVQF LLKQAGVEKR TGDLFGNRDL MNIARNMARG
401: LKGVEMDSII RWRL
101: NLLKDTQIHI LADSDEHEAV QQVQEFYADF VAGDPYHLTL NMASNHLYML PAVVDPSGLQ RYSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: AMVHELIGLQ DNKVDLRSIG SLPKDQQVVI ILQYQEMARF VDNYPEYKKM QGNVSKHATL VTEMSKLVKA RRLMLVSQTE QDLACNGGQG AAYEAVTDLL
301: NNESVSDIDR LRLVMLYALR YEKENPVQLM QLFNKLASRS PKYKPGWIMI CSSATTILVS SSLVQVLVQF LLKQAGVEKR TGDLFGNRDL MNIARNMARG
401: LKGVEMDSII RWRL
001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
Arabidopsis Description
VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.