CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87742
OQU86127

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	EER87742	AT4G02195.1	10888666
AT1G77140.1	OQU86127	AT4G02195.1	10888666
AT1G77140.1	EER87742	AT5G26980.1	10888666
AT1G77140.1	OQU86127	AT5G26980.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G259600.1	Wheat	cytosol	92.24	92.24
TraesCS2B01G277800.2	Wheat	cytosol	92.24	92.24
TraesCS2A01G264300.1	Wheat	cytosol	92.24	92.24
Os02t0437800-02	Rice	cytosol, plasma membrane	91.89	91.89
Zm00001d049522_P001	Maize	cytosol, plasma membrane	97.35	87.2
HORVU2Hr1G062800.7	Barley	cytosol, plastid	91.89	82.96
GSMUA_Achr10P...	Banana	cytosol	80.95	81.24
VIT_18s0001g15600.t01	Wine grape	cytosol	79.01	78.87
KRH64544	Soybean	endoplasmic reticulum	77.42	77.29
KRH53395	Soybean	cytosol	77.42	77.29
CDX79189	Canola	cytosol	37.21	76.73
Bra008294.1-P	Field mustard	cytosol	76.72	76.45
CDY38360	Canola	cytosol	76.54	76.27
AT1G77140.1	Thale cress	cytosol	76.19	75.92
Solyc04g064820.2.1	Tomato	cytosol, nucleus	76.01	75.88
CDY70457	Canola	cytosol	46.74	74.02
CDX79215	Canola	cytosol	50.62	69.32
CDY13575	Canola	cytosol	67.55	66.84
VIT_03s0038g00020.t01	Wine grape	cytosol	8.29	64.38
CDX79223	Canola	cytosol, plastid	7.05	60.61
CDX79222	Canola	cytosol, mitochondrion	20.46	42.8
CDY71507	Canola	cytosol, golgi	20.81	39.73
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	21.87	19.81
OQU91892	Sorghum	cytosol, mitochondrion	20.81	18.91
KXG19223	Sorghum	cytosol	20.63	17.89
KXG25933	Sorghum	cytosol, plastid	20.81	17.69
OQU84878	Sorghum	nucleus	20.28	17.4
Solyc10g074520.1.1	Tomato	cytosol	8.99	16.89
Solyc10g074510.1.1	Tomato	cytosol	1.76	16.39

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	EntrezGene:8070030
UniProt:C5YKP3	EnsemblPlants:EES13788	ProteinID:EES13788	ProteinID:EES13788.1	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810
GO:GO:0006886	GO:GO:0006904	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0016020
GO:GO:0016192	InterPro:IPR027482	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3
EnsemblPlantsGene:SORBI_3007G120500	SUPFAM:SSF56815	unigene:Sbi.12735	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf
UniParc:UPI0001A87F0A	RefSeq:XP_002444293.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:52088642..52095140

Molecular Weight (calculated)

64616.9 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.209

Length

567 amino acids

Sequence
(BLAST)

001: MVLITLVRDY IDRMLHDIPG MKVLVLDPQT VGMVSVVYSQ SDLLRKEVFL VETMDNASSS RESMAHLKAV YFLRPSADNV QKLRRHLAMP RFAEYHLFFS
101: SILKVPQIQI LADSDEQEVV QQVQEFYADF CAIDPYHFTL NIQNNHIYML PTVVDPPGMQ SFCDRAVDGI ASVFLALKRR PVIRFQRTSD VAKRIAQETA
201: RLMYEQESGL FDFRRTENSS LLLVIDRRDD PVTPLLNQWT YQAMVHELVG IENNKVDLRG FANVPKDQQE VVLSSVQDDF FRANMFENFG DLGMNLKRMV
301: DDFQHLSKNS LNLQSIGDMA KFVSNYPEYR KTHGNVTKHV NLVSELSRIV EERKLMLVSQ TEQELACTSG QAAAFEAVTS LLNNERVSDI DRLRSVMLYA
401: LRYEKESPVQ LMQLFNKLAS HSAKYKSGLV QFLLKQAGID KRTGDLYGNR DLLNIARNMA RGLKGVENVY TQHQPLIFQT MEGIVKGRLR DVDYPLVGNH
501: FQQGRPQDVV IFVVGGTTYE EARSVALYNA ANPGVRFFLG GSVVLNSKRF LEDLGEAQRI SKSSTII

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.