Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71507 | Canola | cytosol, golgi | 57.53 | 14.14 |
| VIT_18s0001g15600.t01 | Wine grape | cytosol | 83.56 | 10.74 |
| GSMUA_Achr10P... | Banana | cytosol | 73.97 | 9.56 |
| Os02t0437800-02 | Rice | cytosol, plasma membrane | 68.49 | 8.82 |
| EES13788 | Sorghum | cytosol | 64.38 | 8.29 |
| TraesCS2A01G264300.1 | Wheat | cytosol | 63.01 | 8.11 |
| TraesCS2D01G259600.1 | Wheat | cytosol | 63.01 | 8.11 |
| TraesCS2B01G277800.2 | Wheat | cytosol | 63.01 | 8.11 |
| Zm00001d049522_P001 | Maize | cytosol, plasma membrane | 64.38 | 7.42 |
| HORVU2Hr1G062800.7 | Barley | cytosol, plastid | 61.64 | 7.17 |
| VIT_15s0045g00060.t01 | Wine grape | cytosol | 16.44 | 2.63 |
| VIT_13s0019g05000.t01 | Wine grape | cytosol | 19.18 | 2.11 |
| VIT_15s0048g00970.t01 | Wine grape | cytosol | 16.44 | 1.94 |
| VIT_03s0038g03110.t01 | Wine grape | cytosol | 13.7 | 1.68 |
| Solyc10g074520.1.1 | Tomato | cytosol | 5.48 | 1.32 |
| CDX79223 | Canola | cytosol, plastid | 0.0 | 0.0 |
| Solyc10g074510.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_03s0038g00020 | EMBL:FN596508 | EnsemblPlants:VIT_03s0038g00020.t01 | EnsemblPlantsGene:VIT_03s0038g00020 | Gene3D:3.90.830.10 | GO:GO:0006810 |
| GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf |
| PANTHER:PTHR11679 | PANTHER:PTHR11679:SF3 | PFAM:PF00995 | ProteinID:CBI38031 | ProteinID:CBI38031.3 | SUPFAM:SSF56815 |
| UniParc:UPI0001BE4D78 | UniProt:D7U5L2 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr3:+:5195..7439
Molecular Weight (calculated)
8303.0 Da
IEP (calculated)
6.517
GRAVY (calculated)
-0.364
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MVHELIGIQN NKADLRNISK FPKDQQEVVL SSELAVFFKA NMHVGDIGMN IKRMVDEFQQ ISKGNQNIQT IDS
001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
Arabidopsis Description
VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.