Factsheet for GSMUA_Achr10P20680_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr4P18460_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	GSMUA_Achr10P...	AT4G02195.1	10888666
AT1G77140.1	GSMUA_Achr11P...	AT4G02195.1	10888666
AT1G77140.1	GSMUA_Achr4P18460_001	AT4G02195.1	10888666
AT1G77140.1	GSMUA_Achr10P...	AT5G26980.1	10888666
AT1G77140.1	GSMUA_Achr11P...	AT5G26980.1	10888666
AT1G77140.1	GSMUA_Achr4P18460_001	AT5G26980.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0001g15600.t01	Wine grape	cytosol	87.08	86.62
KRH64544	Soybean	endoplasmic reticulum	83.89	83.45
KRH53395	Soybean	cytosol	83.36	82.92
Solyc04g064820.2.1	Tomato	cytosol, nucleus	83.01	82.57
Bra008294.1-P	Field mustard	cytosol	81.95	81.37
CDY38360	Canola	cytosol	81.77	81.2
CDX79189	Canola	cytosol	39.47	81.09
AT1G77140.1	Thale cress	cytosol	81.59	81.02
EES13788	Sorghum	cytosol	81.24	80.95
Os02t0437800-02	Rice	cytosol, plasma membrane	81.24	80.95
CDY70457	Canola	cytosol	51.15	80.73
TraesCS2D01G259600.1	Wheat	cytosol	80.71	80.42
TraesCS2B01G277800.2	Wheat	cytosol	80.71	80.42
TraesCS2A01G264300.1	Wheat	cytosol	80.71	80.42
VIT_03s0038g00020.t01	Wine grape	cytosol	9.56	73.97
CDX79215	Canola	cytosol	53.45	72.95
Zm00001d049522_P001	Maize	cytosol, plasma membrane	81.42	72.67
HORVU2Hr1G062800.7	Barley	cytosol, plastid	80.53	72.45
CDY13575	Canola	cytosol	72.74	71.73
CDX79223	Canola	cytosol, plastid	7.43	63.64
CDX79222	Canola	cytosol, mitochondrion	23.19	48.34
CDY71507	Canola	cytosol, golgi	23.54	44.78
GSMUA_Achr7P16530_001	Banana	nucleus	22.12	18.8
GSMUA_Achr7P16520_001	Banana	cytosol	21.59	18.26
GSMUA_Achr3P26940_001	Banana	cytosol	17.88	17.84
GSMUA_Achr9P24460_001	Banana	cytosol	20.18	17.19
Solyc10g074520.1.1	Tomato	cytosol	8.67	16.23
Solyc10g074510.1.1	Tomato	cytosol	1.59	14.75

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0006904	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987
GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:GSMUA_Achr10G20680_001	EnsemblPlants:GSMUA_Achr10P20680_001	EnsemblPlants:GSMUA_Achr10T20680_001	InterPro:IPR027482
UniProt:M0RJZ3	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	SUPFAM:SSF56815
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0002963884	SEG:seg	:

Description

Vacuolar protein sorting-associated protein 45 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G20680_001]

Coordinates

chr10:-:26546366..26553806

Molecular Weight (calculated)

64779.3 Da

IEP (calculated)

6.805

GRAVY (calculated)

-0.240

Length

565 amino acids

Sequence
(BLAST)

001: MVLITLVRDY IGRMLQDIPG MKVLILDSST VSIVSVAYSQ SELLKKEVFL VELVDSMSKE TMTHLKAVYF LRPTSENIQK LRRQLANPRF GEYHLFFSNI
101: LKITQIQVLA DSDEQEVVHQ VQEFFADFCA IDPYHFTLNM QMNHIYMLPA VVDPPSSHSF CDRAVDGIAA VFLALKRRPV IRYQRASDIA KRIAQETAKL
201: MYEQESGLFD FRRTEFSPLL LVIDRRDDPV TPLLNQWTYQ AMVHELIGIE DNKVDLRNTP KVSKDQQEVV LSSEQDSFFK SNMYENFGDL GMNIKTMVDE
301: FQQITNSNQN IQTIEDMMKF VNNYPEYRKM QGNVSKHVTM VTEMSRIVEE RKLMIVSQTE QELACNGGQV AAFEAVTKLL NDETISDVDR LRLVMLYALR
401: YEKESPVQLM QLFNKLASHS AKYKPGLVQF LLKQAGIDKR TGDLYGNRDL LNIARNMARG LKGVENVYTQ HQPLLFQTME SIIKGRLRDV DYPFIGNHFQ
501: QGRPQDVVIF IVGGTTYEEA RTVALHNAAN SGTRFILGGS VVLNSKRFLK DLEEAQRISR TSNAV

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.