CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67539
CDX73599
CDX74445
CDX74451
CDX78128
CDX95233
CDX97432
CDY13344
CDY22037
CDY30250
CDY37005
CDY52786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	CDX67539	AT3G52850.1	10888666
AT1G77140.1	CDX73599	AT3G52850.1	10888666
AT1G77140.1	CDX78128	AT3G52850.1	10888666
AT1G77140.1	CDY13344	AT3G52850.1	10888666
AT1G77140.1	CDX97432	AT4G02195.1	10888666
AT1G77140.1	CDY22037	AT4G02195.1	10888666
AT1G77140.1	CDY52786	AT4G02195.1	10888666
AT1G77140.1	CDX74445	AT5G39510.1	10888666
AT1G77140.1	CDX74451	AT5G39510.1	10888666
AT1G77140.1	CDX95233	AT5G39510.1	10888666
AT1G77140.1	CDY30250	AT5G39510.1	10888666
AT1G77140.1	CDY37005	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G77140.1	Thale cress	cytosol	98.18	47.45
CDY38360	Canola	cytosol	97.09	46.92
CDY13575	Canola	cytosol	97.45	46.77
Solyc04g064820.2.1	Tomato	cytosol, nucleus	86.91	42.08
VIT_18s0001g15600.t01	Wine grape	cytosol	85.45	41.37
KRH64544	Soybean	endoplasmic reticulum	85.09	41.2
KRH53395	Soybean	cytosol	85.09	41.2
GSMUA_Achr10P...	Banana	cytosol	81.09	39.47
TraesCS2D01G259600.1	Wheat	cytosol	78.55	38.1
TraesCS2B01G277800.2	Wheat	cytosol	78.55	38.1
TraesCS2A01G264300.1	Wheat	cytosol	78.55	38.1
Os02t0437800-02	Rice	cytosol, plasma membrane	77.09	37.39
CDX79222	Canola	cytosol, mitochondrion	36.73	37.27
EES13788	Sorghum	cytosol	76.73	37.21
CDX79215	Canola	cytosol	54.91	36.47
HORVU2Hr1G062800.7	Barley	cytosol, plastid	78.55	34.39
Zm00001d049522_P001	Maize	cytosol, plasma membrane	77.45	33.65
CDY52164	Canola	cytosol	5.09	25.93
CDY70457	Canola	cytosol	29.45	22.63
CDY49318	Canola	plastid	5.09	11.48
CDY39875	Canola	cytosol	12.36	10.4
CDY26559	Canola	cytosol	19.64	8.11
CDY15993	Canola	cytosol	19.64	8.1
CDY30074	Canola	cytosol	19.27	7.93
CDX98070	Canola	cytosol	18.91	7.82
CDX86721	Canola	cytosol	18.55	7.74
CDX94488	Canola	cytosol	18.55	7.67
CDX79223	Canola	cytosol, plastid	1.82	7.58
CDY68111	Canola	cytosol	18.18	7.47
CDX90817	Canola	cytosol	18.18	7.47
CDY38041	Canola	nucleus	17.45	7.11
CDY29213	Canola	cytosol	14.91	6.81
CDY63506	Canola	cytosol	14.91	6.81
CDY48989	Canola	cytosol	6.55	5.84
CDY71507	Canola	cytosol, golgi	6.18	5.72
CDY52165	Canola	cytosol	6.55	5.0
CDY26558	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX79189	EnsemblPlantsGene:GSBRNA2T00131765001	Gene3D:3.40.50.1910	Gene3D:3.90.830.10	GO:A0A078CT27	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	InterPro:Sec-1-like_dom2
InterPro:Sec1-like	InterPro:Sec1-like_sf	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	PFAM:PF00995	ProteinID:CDX79189
ProteinID:CDX79189.1	SUPFAM:SSF56815	UniParc:UPI0004EEF28B	MapMan:22.7.7.1	:	:

Description

BnaC06g21140D

Coordinates

chrLK031817:+:121375..122980

Molecular Weight (calculated)

31201.6 Da

IEP (calculated)

9.435

GRAVY (calculated)

-0.420

Length

275 amino acids

Sequence
(BLAST)

001: MNIKRMVDDF QQVAKSSQNI QTVEDMARFV DNYPEYKKMQ GNVSKHVTLV TEMSKLVEAR KLMTVSQTEQ DLACNGGQGA AYEAVTDLLN NESVSDIDRL
101: RLVMLYALRY EKENPVQLMQ LFNKLASRSP KYKPGLVQFL LKQAGVEKRT GDLFGNRDLM NIARNMARGL KGVENVYTQH QPLLFQTMES ITRGRLRDVD
201: YPFVGDHFQQ GRPQEVVIFM VGGTTYEESR SVALQNATNS GIRFILGGTA VLNSKRFLMD LEESQRISRS GSHMV

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.