Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 5
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52786 | Canola | mitochondrion | 96.58 | 96.58 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 91.61 | 91.33 |
| CDX97432 | Canola | extracellular, vacuole | 7.14 | 88.46 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 69.25 | 70.13 |
| KRH68233 | Soybean | plastid | 67.08 | 67.5 |
| KRG96492 | Soybean | plastid | 67.7 | 67.28 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 49.69 | 67.23 |
| Os06t0116300-01 | Rice | plasma membrane | 68.63 | 66.97 |
| Zm00001d013996_P003 | Maize | mitochondrion | 66.46 | 66.88 |
| Zm00001d039404_P001 | Maize | plasma membrane | 66.77 | 66.56 |
| OQU86127 | Sorghum | mitochondrion | 67.08 | 66.26 |
| CDY18808 | Canola | mitochondrion | 65.22 | 66.04 |
| GSMUA_Achr11P... | Banana | mitochondrion | 66.46 | 65.85 |
| CDY05193 | Canola | mitochondrion | 64.6 | 65.62 |
| CDY27747 | Canola | mitochondrion | 64.6 | 65.62 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 66.15 | 64.94 |
| GSMUA_Achr10P... | Banana | mitochondrion | 64.29 | 62.73 |
| GSMUA_Achr4P18460_001 | Banana | mitochondrion | 64.6 | 62.09 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 59.63 | 60.19 |
| EER87742 | Sorghum | mitochondrion | 44.41 | 60.08 |
| Zm00001d045530_P001 | Maize | cytosol | 16.77 | 60.0 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 65.53 | 58.29 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 57.76 | 56.71 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 54.04 | 54.38 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 41.3 | 51.15 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.4 | GO:A0A078GAK1 | UniProt:A0A078GAK1 | EnsemblPlants:CDY22037 |
| ProteinID:CDY22037 | ProteinID:CDY22037.1 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 |
| EnsemblPlantsGene:GSBRNA2T00018409001 | InterPro:IPR000727 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF83 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EE005D | : | : |
Description
BnaA09g00660DBnaA09g00660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAK1]
Coordinates
chrLK032127:-:229850..231958
Molecular Weight (calculated)
36094.1 Da
IEP (calculated)
6.639
GRAVY (calculated)
-0.533
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTTVY RKHRDACKSA RAPLSDSFGG PVIEMVSGSF ARSNHSSYAP LSTNDPGPSS SNDAFTIGLP PAWVDDSEEI TFNIQKVRDK MGELAKAHSK
101: ALMPTFGDNK GDQRVVEMLT HEITDLLRKS EKRLHNLSTR GGGPSEESNL RKNVQRSLAT DLQSLSMELR RKQSTYLKRL QQQKEGQDGV DLEFNMNGKM
201: SRMDEDEELG GMGFDEHQTV TLKEGQHVSA EREREIQQVL GSVNDLAQIM KDLSALVIDQ GTIVDRIDYN IQNVSTSVEE GYKQLQKAER TQREGAMVKC
301: AMILLILCFI MIVLLILKNV LF
101: ALMPTFGDNK GDQRVVEMLT HEITDLLRKS EKRLHNLSTR GGGPSEESNL RKNVQRSLAT DLQSLSMELR RKQSTYLKRL QQQKEGQDGV DLEFNMNGKM
201: SRMDEDEELG GMGFDEHQTV TLKEGQHVSA EREREIQQVL GSVNDLAQIM KDLSALVIDQ GTIVDRIDYN IQNVSTSVEE GYKQLQKAER TQREGAMVKC
301: AMILLILCFI MIVLLILKNV LF
001: MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
Arabidopsis Description
SYP42Syntaxin-42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWH4]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.