Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G044300.1 | Wheat | cytosol | 64.09 | 97.48 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 87.29 | 96.34 |
| Os06t0116300-01 | Rice | plasma membrane | 82.87 | 90.91 |
| OQU86127 | Sorghum | mitochondrion | 81.77 | 90.8 |
| Zm00001d039404_P001 | Maize | plasma membrane | 80.94 | 90.71 |
| Zm00001d013996_P003 | Maize | mitochondrion | 79.28 | 89.69 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 75.69 | 83.54 |
| EER87742 | Sorghum | mitochondrion | 52.21 | 79.41 |
| GSMUA_Achr11P... | Banana | mitochondrion | 68.51 | 76.31 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 68.51 | 75.84 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 54.42 | 75.77 |
| GSMUA_Achr10P... | Banana | mitochondrion | 68.78 | 75.45 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 65.47 | 73.15 |
| Bra040527.1-P | Field mustard | mitochondrion | 63.81 | 72.64 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 63.54 | 72.33 |
| CDY18808 | Canola | mitochondrion | 63.54 | 72.33 |
| Zm00001d045530_P001 | Maize | cytosol | 17.96 | 72.22 |
| KRG92945 | Soybean | mitochondrion | 64.92 | 72.09 |
| CDY05193 | Canola | mitochondrion | 62.71 | 71.61 |
| KRH33850 | Soybean | endoplasmic reticulum | 64.09 | 71.17 |
| CDY27747 | Canola | mitochondrion | 61.88 | 70.66 |
| Bra039417.1-P | Field mustard | mitochondrion | 61.88 | 70.66 |
| AT5G26980.1 | Thale cress | mitochondrion | 61.6 | 69.25 |
| AT3G05710.2 | Thale cress | mitochondrion | 62.71 | 68.58 |
| KRH68233 | Soybean | plastid | 60.5 | 68.44 |
| KRG96492 | Soybean | plastid | 61.05 | 68.21 |
| CDY52786 | Canola | mitochondrion | 58.84 | 66.15 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 52.21 | 65.62 |
| CDY22037 | Canola | mitochondrion | 58.29 | 65.53 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 65.47 | 64.58 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 56.63 | 64.26 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 56.91 | 63.78 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 51.66 | 58.44 |
| CDX97432 | Canola | extracellular, vacuole | 4.14 | 57.69 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.4 | UniProt:A0A287VH04 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:HORVU7Hr1G008670 | EnsemblPlants:HORVU7Hr1G008670.5 | InterPro:IPR000727 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF83 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI000B466BF4 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr7H:+:11274943..11278789
Molecular Weight (calculated)
40476.8 Da
IEP (calculated)
9.113
GRAVY (calculated)
-0.398
Length
362 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTPLF RKYRDALRHV RAPAGAPSAS SSSSGGGAGG PAVIEMASLL RPDRNYAPLS TDDPSASSSR GAATVGLPPA WVDVSEEISA NMQRAKTKMA
101: ELAKAHAKAL MPSFGDGRDD QRAIEVLTHE ITDLLKRSEK KLQKLSMKDS SEDSNVRKNV QRSLATDLQT LSMEFRKKQS TYLKQLRQQK EVCHSALRCF
201: LKSRCLCYLY HSNKGSWVIE MRFQGQDGVD LEMNMNGSKS TFELEDDEFE DVGFTEVQMS KLKKSEAFTR EREREIEQVA QSVNELAQIM KDLSVLVIDQ
301: GTIVDRIDYN VQNVAASVEE GYKQLQKAER TQKKGGMVMC ATVLVILIFI LIILLVLKKL IF
101: ELAKAHAKAL MPSFGDGRDD QRAIEVLTHE ITDLLKRSEK KLQKLSMKDS SEDSNVRKNV QRSLATDLQT LSMEFRKKQS TYLKQLRQQK EVCHSALRCF
201: LKSRCLCYLY HSNKGSWVIE MRFQGQDGVD LEMNMNGSKS TFELEDDEFE DVGFTEVQMS KLKKSEAFTR EREREIEQVA QSVNELAQIM KDLSVLVIDQ
301: GTIVDRIDYN VQNVAASVEE GYKQLQKAER TQKKGGMVMC ATVLVILIFI LIILLVLKKL IF
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
Arabidopsis Description
SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.