Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 5
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039404_P001 | Maize | plasma membrane | 93.03 | 95.05 |
| OQU86127 | Sorghum | mitochondrion | 93.64 | 94.79 |
| Zm00001d013996_P003 | Maize | mitochondrion | 90.3 | 93.12 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 66.67 | 92.44 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 91.21 | 91.77 |
| EER87742 | Sorghum | mitochondrion | 60.3 | 83.61 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 90.91 | 82.87 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 77.88 | 78.59 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 77.88 | 78.35 |
| GSMUA_Achr11P... | Banana | mitochondrion | 76.06 | 77.23 |
| GSMUA_Achr10P... | Banana | mitochondrion | 76.36 | 76.36 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 73.64 | 75.0 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 71.82 | 74.53 |
| CDY05193 | Canola | mitochondrion | 70.91 | 73.82 |
| KRG92945 | Soybean | mitochondrion | 72.73 | 73.62 |
| KRH33850 | Soybean | endoplasmic reticulum | 72.42 | 73.31 |
| Bra040527.1-P | Field mustard | mitochondrion | 70.61 | 73.27 |
| CDX97432 | Canola | extracellular, vacuole | 5.76 | 73.08 |
| CDY18808 | Canola | mitochondrion | 70.3 | 72.96 |
| CDY27747 | Canola | mitochondrion | 70.0 | 72.87 |
| Bra039417.1-P | Field mustard | mitochondrion | 70.0 | 72.87 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 57.27 | 72.69 |
| AT3G05710.2 | Thale cress | mitochondrion | 71.82 | 71.6 |
| KRH68233 | Soybean | plastid | 69.39 | 71.56 |
| Zm00001d045530_P001 | Maize | cytosol | 19.39 | 71.11 |
| KRG96492 | Soybean | plastid | 69.7 | 70.99 |
| AT5G26980.1 | Thale cress | mitochondrion | 69.09 | 70.81 |
| CDY52786 | Canola | mitochondrion | 66.97 | 68.63 |
| CDY22037 | Canola | mitochondrion | 66.97 | 68.63 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 59.09 | 67.71 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 64.85 | 66.25 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 73.64 | 66.21 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 62.12 | 64.26 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 56.06 | 57.81 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.4 | EntrezGene:4339929 | EMBL:AK243105 | ProteinID:BAD67916.1 |
| ProteinID:BAS95848.1 | ncoils:Coil | ProteinID:EEE64988.1 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 |
| GO:GO:0061025 | InterPro:IPR000727 | EnsemblPlantsGene:Os06g0116300 | EnsemblPlants:Os06t0116300-01 | PFAM:PF05739 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF83 | UniProt:Q5VRL4 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI0000457CF4 | RefSeq:XP_015641289.1 | SEG:seg | : | : | : |
Description
Similar to Syntaxin. (Os06t0116300-01)
Coordinates
chr6:-:902675..907076
Molecular Weight (calculated)
36577.0 Da
IEP (calculated)
9.229
GRAVY (calculated)
-0.459
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTPLY RKYRDALRHV RAPAGAPSSS SSGGGGGGGG GGPVIEMASL LRSNRPYAPL STDDPSAASS RSAVTVGLPP AWVDVSEEIS ANMQRARTKM
101: AELAKAHAKA LMPSFGDGRD DQRAIEILTH EVTDLLKRSE KRLQKLSMKD SSEDSNVRKN VQRSLATDLQ SLSMEFRKKQ STYLKQLRQQ KEGQDGVDLE
201: MNMNGSKSTF ELGDDEFEDV GFTEVQMSKL KKSEAFTRER EREIEQVVES VNELAQIMKD LSVLVIDQGT IIDRIDYNIQ NVAASVEEGY KQLQKAERTQ
301: KKGGMVMCAT TLVILIFIMI VLLILKKILF
101: AELAKAHAKA LMPSFGDGRD DQRAIEILTH EVTDLLKRSE KRLQKLSMKD SSEDSNVRKN VQRSLATDLQ SLSMEFRKKQ STYLKQLRQQ KEGQDGVDLE
201: MNMNGSKSTF ELGDDEFEDV GFTEVQMSKL KKSEAFTRER EREIEQVVES VNELAQIMKD LSVLVIDQGT IIDRIDYNIQ NVAASVEEGY KQLQKAERTQ
301: KKGGMVMCAT TLVILIFIMI VLLILKKILF
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
Arabidopsis Description
SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.