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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • cytosol 3
  • nucleus 1
  • mitochondrion 4
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
 nucleus: 18203134
plasma membrane: 18260611
nucleus: 19621931
extracellular: 24083427
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
msms PMID: 18203134 doi
G Li, BR Nallamilli, F Tan, Z Peng
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os01t0834500-01 Rice mitochondrion 100.0 100.0
Zm00001d034628_P001 Maize mitochondrion 99.3 99.3
EER90632 Sorghum mitochondrion 99.3 99.3
Zm00001d012978_P001 Maize extracellular 95.07 99.26
VIT_08s0040g02420.t01 Wine grape mitochondrion 96.48 96.48
Solyc10g086020.1.1 Tomato plastid 96.48 96.48
Solyc10g084310.1.1 Tomato mitochondrion 96.48 96.48
Solyc09g007350.2.1 Tomato mitochondrion 96.48 96.48
PGSC0003DMT400065339 Potato mitochondrion 96.48 96.48
PGSC0003DMT400045338 Potato extracellular 96.48 96.48
PGSC0003DMT400027147 Potato mitochondrion 96.48 96.48
PGSC0003DMT400004414 Potato mitochondrion 96.48 96.48
AT5G02960.1 Thale cress mitochondrion 95.77 95.77
VIT_13s0019g03640.t01 Wine grape mitochondrion 95.77 95.77
Bra001300.1-P Field mustard mitochondrion 95.07 95.07
Bra028856.1-P Field mustard mitochondrion 95.07 95.07
KRH67642 Soybean mitochondrion 95.07 95.07
KRH32405 Soybean nucleus 95.07 95.07
KRG95930 Soybean mitochondrion 95.07 95.07
CDY07936 Canola cytosol, mitochondrion 90.85 94.85
Bra009557.1-P Field mustard cytosol, mitochondrion 90.85 94.85
CDX70336 Canola cytosol, mitochondrion 90.85 94.85
CDX73991 Canola cytosol, mitochondrion 90.85 94.85
CDX80847 Canola cytosol, mitochondrion 90.85 94.85
CDY11236 Canola cytosol, mitochondrion 90.85 94.85
CDY04874 Canola cytosol, mitochondrion 90.85 94.85
CDY55693 Canola cytosol, mitochondrion 90.85 94.85
KRH19812 Soybean nucleus 94.37 94.37
Bra005745.1-P Field mustard cytosol, mitochondrion 90.14 94.12
AT3G09680.1 Thale cress mitochondrion 92.96 92.96
KRH24942 Soybean cytosol 83.1 92.19
KRG89057 Soybean mitochondrion 78.87 91.06
HORVU5Hr1G112390.2 Barley mitochondrion 98.59 90.32
Os10t0350001-00 Rice cytosol, extracellular 27.46 86.67
Solyc11g013160.1.1 Tomato cytosol 36.62 85.25
Solyc06g005110.2.1 Tomato mitochondrion, nucleus 38.73 84.62
Bra003985.1-P Field mustard mitochondrion 83.8 83.8
VIT_06s0004g03410.t01 Wine grape cytosol 94.37 82.21
CDY62061 Canola mitochondrion 82.39 81.25
CDY72262 Canola cytosol 26.76 80.85
CDY70106 Canola mitochondrion 80.28 79.17
CDX84175 Canola cytosol 46.48 75.86
CDY10413 Canola mitochondrion 95.07 74.18
CDY37167 Canola mitochondrion 54.93 73.58
Bra022086.1-P Field mustard cytosol 57.04 70.43
Solyc06g011510.1.1 Tomato cytosol 24.65 70.0
CDY72261 Canola mitochondrion 26.06 68.52
CDY71254 Canola plastid 61.27 68.5
CDY43631 Canola cytosol 47.89 67.33
CDY01752 Canola vacuole 83.1 60.82
CDY22194 Canola endoplasmic reticulum 95.07 57.69
CDY41304 Canola endoplasmic reticulum 95.07 57.69
Bra034077.1-P Field mustard endoplasmic reticulum 95.07 52.33
Os10t0350450-00 Rice mitochondrion 65.49 50.0
KRH55344 Soybean cytosol 50.7 49.66
Protein Annotations
MapMan:17.1.3.1.24Gene3D:2.40.50.140EntrezGene:4327414EntrezGene:4334580EntrezGene:9266509ProteinID:AAO60034.1
ProteinID:AAO65856.1ProteinID:ABF99566.1EMBL:AK069399EMBL:AK102675ProteinID:BAB92932.1ProteinID:BAB92933.1
ProteinID:BAC02683.1ProteinID:BAC02684.1ProteinID:BAF06634.1ProteinID:BAF13622.1ProteinID:BAH91367.1ProteinID:BAS75092.1
ProteinID:BAS87068.1GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0015935GO:GO:0019538GO:GO:0022627
InterPro:NA-bd_OB-foldEnsemblPlantsGene:Os03g0818400EnsemblPlants:Os03t0818400-01PFAM:PF00164PIRSF:PIRSF002133ScanProsite:PS00055
PANTHER:PTHR11652PANTHER:PTHR11652:SF37UniProt:Q8L4F2InterPro:Ribosomal_S12/S23InterPro:Ribosomal_S23_euk/arcSUPFAM:SSF50249
TIGRFAMs:TIGR00982UniParc:UPI0000002C9CRefSeq:XP_015611534.1RefSeq:XP_015611545.1RefSeq:XP_015629855.1:
Description
Similar to 40S ribosomal protein S23 (S12). (Os03t0818400-01);Similar to 40S ribosomal protein S23 (S12). (Os03t0818400-02)
Coordinates
chr3:-:34347178..34349415
Molecular Weight (calculated)
15661.3 Da
IEP (calculated)
11.188
GRAVY (calculated)
-0.561
Length
142 amino acids
Sequence
(BLAST)
001: MGKTRGMGAG RKLKTHRRNQ RWADKAYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLVKNGKKI AAFVPNDGCL NFIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.