CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	45.53	86.15
KRH67642	Soybean	mitochondrion	96.75	83.8
KRH32405	Soybean	nucleus	96.75	83.8
KRG95930	Soybean	mitochondrion	96.75	83.8
KRH19812	Soybean	nucleus	95.94	83.1
PGSC0003DMT400065339	Potato	mitochondrion	95.12	82.39
VIT_08s0040g02420.t01	Wine grape	mitochondrion	93.5	80.99
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	89.43	80.88
KRH24942	Soybean	cytosol	83.74	80.47
VIT_13s0019g03640.t01	Wine grape	mitochondrion	92.68	80.28
Zm00001d012978_P001	Maize	extracellular	88.62	80.15
Zm00001d010566_P001	Maize	plasma membrane	91.87	79.58
EES19663	Sorghum	mitochondrion	91.87	79.58
EES03842	Sorghum	mitochondrion	91.87	79.58
EER90632	Sorghum	mitochondrion	91.87	79.58
Zm00001d034628_P001	Maize	mitochondrion	91.87	79.58
Zm00001d042966_P001	Maize	mitochondrion	91.87	79.58
AT5G02960.1	Thale cress	mitochondrion	91.06	78.87
Os03t0818400-01	Rice	nucleus	91.06	78.87
Os01t0834500-01	Rice	mitochondrion	91.06	78.87
CDY11236	Canola	cytosol, mitochondrion	86.99	78.68
Bra009557.1-P	Field mustard	cytosol, mitochondrion	86.99	78.68
CDX70336	Canola	cytosol, mitochondrion	86.99	78.68
CDX73991	Canola	cytosol, mitochondrion	86.99	78.68
CDX80847	Canola	cytosol, mitochondrion	86.99	78.68
CDY07936	Canola	cytosol, mitochondrion	86.99	78.68
CDY04874	Canola	cytosol, mitochondrion	86.99	78.68
CDY55693	Canola	cytosol, mitochondrion	86.99	78.68
Bra001300.1-P	Field mustard	mitochondrion	90.24	78.17
Bra028856.1-P	Field mustard	mitochondrion	90.24	78.17
Bra005745.1-P	Field mustard	cytosol, mitochondrion	86.18	77.94
HORVU1Hr1G071570.3	Barley	mitochondrion	90.24	77.08
AT3G09680.1	Thale cress	mitochondrion	88.62	76.76
CDY72262	Canola	cytosol	29.27	76.6
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	69.92	75.44
Zm00001d028137_P001	Maize	cytosol	30.08	72.55
HORVU5Hr1G112390.2	Barley	mitochondrion	90.24	71.61
Bra003985.1-P	Field mustard	mitochondrion	80.49	69.72
VIT_06s0004g03410.t01	Wine grape	cytosol	91.87	69.33
CDY62061	Canola	mitochondrion	79.67	68.06
CDY70106	Canola	mitochondrion	78.05	66.67
CDY71254	Canola	plastid	68.29	66.14
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	92.68	63.69
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	92.68	62.98
GSMUA_Achr2P23030_001	Banana	mitochondrion	92.68	61.96
CDY10413	Canola	mitochondrion	90.24	60.99
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	91.06	59.57
CDY37167	Canola	mitochondrion	50.41	58.49
Zm00001d036211_P001	Maize	endoplasmic reticulum	52.03	58.18
Bra022086.1-P	Field mustard	cytosol	52.85	56.52
CDX84175	Canola	cytosol	39.84	56.32
GSMUA_Achr2P22920_001	Banana	mitochondrion	78.86	56.07
HORVU6Hr1G043260.1	Barley	mitochondrion	39.02	54.55
KRH55344	Soybean	cytosol	60.98	51.72
CDY01752	Canola	vacuole	78.05	49.48
CDY43631	Canola	cytosol	39.84	48.51
CDY41304	Canola	endoplasmic reticulum	90.24	47.44
CDY22194	Canola	endoplasmic reticulum	90.24	47.44
Os10t0350001-00	Rice	cytosol, extracellular	17.07	46.67
Os10t0350450-00	Rice	mitochondrion	69.11	45.7
Bra034077.1-P	Field mustard	endoplasmic reticulum	90.24	43.02
CDY72261	Canola	mitochondrion	16.26	37.04
Zm00001d044342_P002	Maize	cytosol, mitochondrion	67.48	35.17
Zm00001d018970_P001	Maize	cytosol	45.53	22.13
Zm00001d048114_P001	Maize	cytosol	76.42	18.36

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EnsemblPlantsGene:GLYMA_U021200	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	UniProt:K7LPV4	EnsemblPlants:KRG89057	ProteinID:KRG89057	ProteinID:KRG89057.1
InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37
InterPro:Ribosomal_S12/S23	SUPFAM:SSF50249	UniParc:UPI0002955881	:	:	:

Description

hypothetical protein

Coordinates

chrscaffold_21:+:3442246..3443011

Molecular Weight (calculated)

13926.2 Da

IEP (calculated)

11.265

GRAVY (calculated)

-0.724

Length

123 amino acids

Sequence
(BLAST)

001: MQKTHGMGAA RKLKSHRRRQ RWADKSYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYTEENIIRF
101: KVVKVSGVSL LALFKEKKEK PRS

Best Arabidopsis Sequence Match ( AT3G09680.1 )
(BLAST)

001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.