Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0834500-01 | Rice | mitochondrion | 75.53 | 100.0 |
| Zm00001d042966_P001 | Maize | mitochondrion | 75.0 | 99.3 |
| EES03842 | Sorghum | mitochondrion | 75.0 | 99.3 |
| HORVU1Hr1G071570.3 | Barley | mitochondrion | 74.47 | 97.22 |
| VIT_08s0040g02420.t01 | Wine grape | mitochondrion | 72.87 | 96.48 |
| Solyc10g086020.1.1 | Tomato | plastid | 72.87 | 96.48 |
| Solyc10g084310.1.1 | Tomato | mitochondrion | 72.87 | 96.48 |
| Solyc09g007350.2.1 | Tomato | mitochondrion | 72.87 | 96.48 |
| PGSC0003DMT400065339 | Potato | mitochondrion | 72.87 | 96.48 |
| PGSC0003DMT400045338 | Potato | extracellular | 72.87 | 96.48 |
| PGSC0003DMT400027147 | Potato | mitochondrion | 72.87 | 96.48 |
| PGSC0003DMT400004414 | Potato | mitochondrion | 72.87 | 96.48 |
| AT5G02960.1 | Thale cress | mitochondrion | 72.34 | 95.77 |
| VIT_13s0019g03640.t01 | Wine grape | mitochondrion | 72.34 | 95.77 |
| Bra001300.1-P | Field mustard | mitochondrion | 71.81 | 95.07 |
| Bra028856.1-P | Field mustard | mitochondrion | 71.81 | 95.07 |
| KRH67642 | Soybean | mitochondrion | 71.81 | 95.07 |
| KRH32405 | Soybean | nucleus | 71.81 | 95.07 |
| KRG95930 | Soybean | mitochondrion | 71.81 | 95.07 |
| CDY07936 | Canola | cytosol, mitochondrion | 68.62 | 94.85 |
| CDY11236 | Canola | cytosol, mitochondrion | 68.62 | 94.85 |
| Bra009557.1-P | Field mustard | cytosol, mitochondrion | 68.62 | 94.85 |
| CDX70336 | Canola | cytosol, mitochondrion | 68.62 | 94.85 |
| CDX73991 | Canola | cytosol, mitochondrion | 68.62 | 94.85 |
| CDY55693 | Canola | cytosol, mitochondrion | 68.62 | 94.85 |
| CDX80847 | Canola | cytosol, mitochondrion | 68.62 | 94.85 |
| CDY04874 | Canola | cytosol, mitochondrion | 68.62 | 94.85 |
| KRH19812 | Soybean | nucleus | 71.28 | 94.37 |
| Bra005745.1-P | Field mustard | cytosol, mitochondrion | 68.09 | 94.12 |
| AT3G09680.1 | Thale cress | mitochondrion | 70.21 | 92.96 |
| KRH24942 | Soybean | cytosol | 62.77 | 92.19 |
| KRG89057 | Soybean | mitochondrion | 59.57 | 91.06 |
| HORVU5Hr1G112390.2 | Barley | mitochondrion | 74.47 | 90.32 |
| Solyc11g013160.1.1 | Tomato | cytosol | 27.66 | 85.25 |
| Solyc06g005110.2.1 | Tomato | mitochondrion, nucleus | 29.26 | 84.62 |
| Bra003985.1-P | Field mustard | mitochondrion | 63.3 | 83.8 |
| VIT_06s0004g03410.t01 | Wine grape | cytosol | 71.28 | 82.21 |
| CDY62061 | Canola | mitochondrion | 62.23 | 81.25 |
| CDY72262 | Canola | cytosol | 20.21 | 80.85 |
| CDY70106 | Canola | mitochondrion | 60.64 | 79.17 |
| CDY10413 | Canola | mitochondrion | 74.47 | 76.92 |
| CDX84175 | Canola | cytosol | 35.11 | 75.86 |
| CDY37167 | Canola | mitochondrion | 41.49 | 73.58 |
| CDY71254 | Canola | plastid | 48.4 | 71.65 |
| Bra022086.1-P | Field mustard | cytosol | 43.09 | 70.43 |
| Solyc06g011510.1.1 | Tomato | cytosol | 18.62 | 70.0 |
| CDY72261 | Canola | mitochondrion | 19.68 | 68.52 |
| CDY43631 | Canola | cytosol | 36.17 | 67.33 |
| CDY01752 | Canola | vacuole | 65.96 | 63.92 |
| HORVU6Hr1G043260.1 | Barley | mitochondrion | 28.19 | 60.23 |
| CDY41304 | Canola | endoplasmic reticulum | 73.4 | 58.97 |
| CDY22194 | Canola | endoplasmic reticulum | 73.4 | 58.97 |
| Bra034077.1-P | Field mustard | endoplasmic reticulum | 73.94 | 53.88 |
| KRH55344 | Soybean | cytosol | 40.96 | 53.1 |
Protein Annotations
| MapMan:17.1.3.1.24 | Gene3D:2.40.50.140 | UniProt:A0A287M417 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 |
| EnsemblPlantsGene:HORVU3Hr1G087380 | EnsemblPlants:HORVU3Hr1G087380.1 | InterPro:NA-bd_OB-fold | PFAM:PF00164 | ScanProsite:PS00055 | PANTHER:PTHR11652 |
| PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 | InterPro:Ribosomal_S23_euk/arc | SUPFAM:SSF50249 | SignalP:SignalP-noTM | TIGRFAMs:TIGR00982 |
| UniParc:UPI000B468D1F | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:+:621112310..621113917
Molecular Weight (calculated)
20889.0 Da
IEP (calculated)
11.718
GRAVY (calculated)
-0.435
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: STYKYIRLLA LIPLSLLQPP PLPAPAPLRR RRRRRLVGVL PSPFANMGKT RGMGAGRKLK THRRNQRWAD KAYKKSHLGN EWKKPFAGSS HAKGIVLEKI
101: GIEAKQPNSA IRKCARVQLV KNGKKIAAFV PNDGCLNFIE ENDEVLIAGF GRKGHAVGDI PGVRFKVVKV SGVSLLALFK EKKEKPRS
101: GIEAKQPNSA IRKCARVQLV KNGKKIAAFV PNDGCLNFIE ENDEVLIAGF GRKGHAVGDI PGVRFKVVKV SGVSLLALFK EKKEKPRS
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.