Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g013160.1.1 | Tomato | cytosol | 60.0 | 49.18 |
| Zm00001d028137_P001 | Maize | cytosol | 38.0 | 37.25 |
| CDY72262 | Canola | cytosol | 32.0 | 34.04 |
| Os10t0350001-00 | Rice | cytosol, extracellular | 28.0 | 31.11 |
| Bra005745.1-P | Field mustard | cytosol, mitochondrion | 72.0 | 26.47 |
| Bra009557.1-P | Field mustard | cytosol, mitochondrion | 72.0 | 26.47 |
| Zm00001d012978_P001 | Maize | extracellular | 72.0 | 26.47 |
| CDY11236 | Canola | cytosol, mitochondrion | 72.0 | 26.47 |
| CDX70336 | Canola | cytosol, mitochondrion | 72.0 | 26.47 |
| CDX73991 | Canola | cytosol, mitochondrion | 72.0 | 26.47 |
| CDX80847 | Canola | cytosol, mitochondrion | 72.0 | 26.47 |
| CDY55693 | Canola | cytosol, mitochondrion | 72.0 | 26.47 |
| CDY07936 | Canola | cytosol, mitochondrion | 72.0 | 26.47 |
| CDY04874 | Canola | cytosol, mitochondrion | 72.0 | 26.47 |
| CDY72261 | Canola | mitochondrion | 28.0 | 25.93 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 70.0 | 25.74 |
| EES03842 | Sorghum | mitochondrion | 72.0 | 25.35 |
| EES19663 | Sorghum | mitochondrion | 72.0 | 25.35 |
| EER90632 | Sorghum | mitochondrion | 72.0 | 25.35 |
| Solyc10g084310.1.1 | Tomato | mitochondrion | 72.0 | 25.35 |
| Solyc09g007350.2.1 | Tomato | mitochondrion | 72.0 | 25.35 |
| AT5G02960.1 | Thale cress | mitochondrion | 72.0 | 25.35 |
| Solyc10g086020.1.1 | Tomato | plastid | 72.0 | 25.35 |
| Zm00001d010566_P001 | Maize | plasma membrane | 72.0 | 25.35 |
| Zm00001d034628_P001 | Maize | mitochondrion | 72.0 | 25.35 |
| Zm00001d042966_P001 | Maize | mitochondrion | 72.0 | 25.35 |
| AT3G09680.1 | Thale cress | mitochondrion | 72.0 | 25.35 |
| Bra001300.1-P | Field mustard | mitochondrion | 72.0 | 25.35 |
| Bra028856.1-P | Field mustard | mitochondrion | 72.0 | 25.35 |
| Os03t0818400-01 | Rice | nucleus | 70.0 | 24.65 |
| Os01t0834500-01 | Rice | mitochondrion | 70.0 | 24.65 |
| HORVU1Hr1G071570.3 | Barley | mitochondrion | 70.0 | 24.31 |
| CDX84175 | Canola | cytosol | 42.0 | 24.14 |
| Bra003985.1-P | Field mustard | mitochondrion | 66.0 | 23.24 |
| HORVU5Hr1G112390.2 | Barley | mitochondrion | 70.0 | 22.58 |
| CDY70106 | Canola | mitochondrion | 64.0 | 22.22 |
| CDY62061 | Canola | mitochondrion | 64.0 | 22.22 |
| CDY43631 | Canola | cytosol | 44.0 | 21.78 |
| GSMUA_Achr2P22920_001 | Banana | mitochondrion | 70.0 | 20.23 |
| CDY37167 | Canola | mitochondrion | 42.0 | 19.81 |
| CDY10413 | Canola | mitochondrion | 72.0 | 19.78 |
| GSMUA_Achr3P01170_001 | Banana | mitochondrion, plastid | 70.0 | 19.55 |
| GSMUA_Achr5P14800_001 | Banana | cytosol, mitochondrion | 70.0 | 19.34 |
| Bra022086.1-P | Field mustard | cytosol | 44.0 | 19.13 |
| GSMUA_Achr2P23030_001 | Banana | mitochondrion | 70.0 | 19.02 |
| HORVU3Hr1G087380.1 | Barley | mitochondrion, plastid | 70.0 | 18.62 |
| CDY01752 | Canola | vacuole | 66.0 | 17.01 |
| GSMUA_Achr4P17160_001 | Banana | cytosol, mitochondrion | 38.0 | 16.67 |
| CDY41304 | Canola | endoplasmic reticulum | 72.0 | 15.38 |
| CDY22194 | Canola | endoplasmic reticulum | 72.0 | 15.38 |
| Bra034077.1-P | Field mustard | endoplasmic reticulum | 72.0 | 13.95 |
| CDY71254 | Canola | plastid | 34.0 | 13.39 |
| Zm00001d018970_P001 | Maize | cytosol | 54.0 | 10.67 |
| Os10t0350450-00 | Rice | mitochondrion | 34.0 | 9.14 |
| Zm00001d044342_P002 | Maize | cytosol, mitochondrion | 38.0 | 8.05 |
| Zm00001d048114_P001 | Maize | cytosol | 56.0 | 5.47 |
| HORVU6Hr1G043260.1 | Barley | mitochondrion | 2.0 | 1.14 |
| Solyc06g005110.2.1 | Tomato | mitochondrion, nucleus | 0.0 | 0.0 |
| Zm00001d036211_P001 | Maize | endoplasmic reticulum | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.40.50.140 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 |
| UniProt:K4C478 | PFAM:PF00164 | PANTHER:PTHR11652 | PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 | EnsemblPlantsGene:Solyc06g011510.1 |
| EnsemblPlants:Solyc06g011510.1.1 | UniParc:UPI000276727E | : | : | : | : |
Description
No Description!
Coordinates
chr6:-:7956762..7956914
Molecular Weight (calculated)
5612.0 Da
IEP (calculated)
7.354
GRAVY (calculated)
0.474
Length
50 amino acids
Sequence
(BLAST)
(BLAST)
1: MLFVNGKKIV VFVPKDGCLN YIEENDEVLI AGFGRKGHAY EIFLVLGLKL
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.