CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028137_P001	Maize	cytosol	48.94	45.1
CDX84175	Canola	cytosol	72.34	39.08
Solyc11g013160.1.1	Tomato	cytosol	48.94	37.7
CDY43631	Canola	cytosol	72.34	33.66
CDY37167	Canola	mitochondrion	74.47	33.02
Solyc06g011510.1.1	Tomato	cytosol	34.04	32.0
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	76.6	31.58
KRG89057	Soybean	mitochondrion	76.6	29.27
CDY71254	Canola	plastid	76.6	28.35
Zm00001d012978_P001	Maize	extracellular	80.85	27.94
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	78.72	27.21
CDY55693	Canola	cytosol, mitochondrion	78.72	27.21
CDY11236	Canola	cytosol, mitochondrion	78.72	27.21
CDX70336	Canola	cytosol, mitochondrion	78.72	27.21
CDY07936	Canola	cytosol, mitochondrion	78.72	27.21
CDY04874	Canola	cytosol, mitochondrion	78.72	27.21
CDX80847	Canola	cytosol, mitochondrion	78.72	27.21
CDX73991	Canola	cytosol, mitochondrion	78.72	27.21
Os03t0818400-01	Rice	nucleus	80.85	26.76
Os01t0834500-01	Rice	mitochondrion	80.85	26.76
EES03842	Sorghum	mitochondrion	80.85	26.76
EES19663	Sorghum	mitochondrion	80.85	26.76
Zm00001d042966_P001	Maize	mitochondrion	80.85	26.76
EER90632	Sorghum	mitochondrion	80.85	26.76
Zm00001d010566_P001	Maize	plasma membrane	80.85	26.76
Zm00001d034628_P001	Maize	mitochondrion	80.85	26.76
HORVU1Hr1G071570.3	Barley	mitochondrion	80.85	26.39
CDY70106	Canola	mitochondrion	80.85	26.39
CDY62061	Canola	mitochondrion	80.85	26.39
KRG95930	Soybean	mitochondrion	78.72	26.06
PGSC0003DMT400004414	Potato	mitochondrion	78.72	26.06
PGSC0003DMT400027147	Potato	mitochondrion	78.72	26.06
PGSC0003DMT400045338	Potato	extracellular	78.72	26.06
PGSC0003DMT400065339	Potato	mitochondrion	78.72	26.06
Solyc09g007350.2.1	Tomato	mitochondrion	78.72	26.06
Solyc10g084310.1.1	Tomato	mitochondrion	78.72	26.06
Solyc10g086020.1.1	Tomato	plastid	78.72	26.06
VIT_08s0040g02420.t01	Wine grape	mitochondrion	78.72	26.06
VIT_13s0019g03640.t01	Wine grape	mitochondrion	78.72	26.06
KRH67642	Soybean	mitochondrion	78.72	26.06
KRH32405	Soybean	nucleus	78.72	26.06
KRH19812	Soybean	nucleus	78.72	26.06
KRH24942	Soybean	cytosol	70.21	25.78
HORVU5Hr1G112390.2	Barley	mitochondrion	80.85	24.52
KRH55344	Soybean	cytosol	70.21	22.76
VIT_06s0004g03410.t01	Wine grape	cytosol	78.72	22.7
CDY01752	Canola	vacuole	91.49	22.16
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	78.72	20.67
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	78.72	20.44
Os10t0350450-00	Rice	mitochondrion	80.85	20.43
CDY10413	Canola	mitochondrion	78.72	20.33
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	80.85	20.21
GSMUA_Achr2P23030_001	Banana	mitochondrion	78.72	20.11
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	27.66	20.0
HORVU6Hr1G043260.1	Barley	mitochondrion	31.91	17.05
GSMUA_Achr2P22920_001	Banana	mitochondrion	59.57	16.18
Zm00001d044342_P002	Maize	cytosol, mitochondrion	80.85	16.1
CDY41304	Canola	endoplasmic reticulum	78.72	15.81
CDY22194	Canola	endoplasmic reticulum	78.72	15.81
Zm00001d036211_P001	Maize	endoplasmic reticulum	34.04	14.55
Zm00001d018970_P001	Maize	cytosol	55.32	10.28
Zm00001d048114_P001	Maize	cytosol	76.6	7.03
CDY72261	Canola	mitochondrion	2.13	1.85
Os10t0350001-00	Rice	cytosol, extracellular	0.0	0.0

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.2	GO:A0A078K304	UniProt:A0A078K304	EnsemblPlants:CDY72262	ProteinID:CDY72262
ProteinID:CDY72262.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00026002001	InterPro:NA-bd_OB-fold	PFAM:PF00164
PANTHER:PTHR11652	PANTHER:PTHR11652:SF14	InterPro:Ribosomal_S12/S23	SUPFAM:SSF50249	UniParc:UPI0004EDE35B	:

Description

BnaAnng40450DBnaAnng40450D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K304]

Coordinates

chrLK049773:-:1891..2171

Molecular Weight (calculated)

4958.2 Da

IEP (calculated)

9.913

GRAVY (calculated)

0.253

Length

47 amino acids

Sequence
(BLAST)

1: KYKPLAGASH AKGIVLELIV QLVKNGKKVA AFVPNDGCLN LIEPNVS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.