Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, nucleus

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 4
  • nucleus 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d036211_P001 Maize endoplasmic reticulum 81.54 48.18
HORVU6Hr1G043260.1 Barley mitochondrion 64.62 47.73
KRG89057 Soybean mitochondrion 86.15 45.53
GSMUA_Achr4P17160_001 Banana cytosol, mitochondrion 76.92 43.86
CDY71254 Canola plastid 81.54 41.73
Solyc09g007350.2.1 Tomato mitochondrion 89.23 40.85
Solyc10g084310.1.1 Tomato mitochondrion 89.23 40.85
PGSC0003DMT400065339 Potato mitochondrion 89.23 40.85
Solyc10g086020.1.1 Tomato plastid 89.23 40.85
VIT_08s0040g02420.t01 Wine grape mitochondrion 86.15 39.44
VIT_13s0019g03640.t01 Wine grape mitochondrion 86.15 39.44
Zm00001d010566_P001 Maize plasma membrane 84.62 38.73
EER90632 Sorghum mitochondrion 84.62 38.73
EES03842 Sorghum mitochondrion 84.62 38.73
EES19663 Sorghum mitochondrion 84.62 38.73
Zm00001d042966_P001 Maize mitochondrion 84.62 38.73
Os01t0834500-01 Rice mitochondrion 84.62 38.73
Os03t0818400-01 Rice nucleus 84.62 38.73
Zm00001d034628_P001 Maize mitochondrion 84.62 38.73
AT5G02960.1 Thale cress mitochondrion 83.08 38.03
Bra028856.1-P Field mustard mitochondrion 81.54 37.32
Bra001300.1-P Field mustard mitochondrion 81.54 37.32
HORVU1Hr1G071570.3 Barley mitochondrion 81.54 36.81
GSMUA_Achr10P... Banana cytosol, mitochondrion 76.92 36.76
Zm00001d012978_P001 Maize extracellular 75.38 36.03
AT3G09680.1 Thale cress mitochondrion 78.46 35.92
Bra009557.1-P Field mustard cytosol, mitochondrion 72.31 34.56
CDX73991 Canola cytosol, mitochondrion 72.31 34.56
CDX70336 Canola cytosol, mitochondrion 72.31 34.56
CDX80847 Canola cytosol, mitochondrion 72.31 34.56
CDY55693 Canola cytosol, mitochondrion 72.31 34.56
CDY04874 Canola cytosol, mitochondrion 72.31 34.56
CDY07936 Canola cytosol, mitochondrion 72.31 34.56
CDY11236 Canola cytosol, mitochondrion 72.31 34.56
Bra003985.1-P Field mustard mitochondrion 75.38 34.51
HORVU5Hr1G112390.2 Barley mitochondrion 81.54 34.19
Bra005745.1-P Field mustard cytosol, mitochondrion 70.77 33.82
KRH24942 Soybean cytosol 66.15 33.59
VIT_06s0004g03410.t01 Wine grape cytosol 83.08 33.13
Solyc11g013160.1.1 Tomato cytosol 30.77 32.79
CDY62061 Canola mitochondrion 72.31 32.64
GSMUA_Achr3P01170_001 Banana mitochondrion, plastid 86.15 31.28
GSMUA_Achr5P14800_001 Banana cytosol, mitochondrion 86.15 30.94
CDY70106 Canola mitochondrion 67.69 30.56
GSMUA_Achr2P23030_001 Banana mitochondrion 86.15 30.43
HORVU3Hr1G087380.1 Barley mitochondrion, plastid 84.62 29.26
CDY10413 Canola mitochondrion 81.54 29.12
Os10t0350450-00 Rice mitochondrion 80.0 27.96
CDY72262 Canola cytosol 20.0 27.66
GSMUA_Achr2P22920_001 Banana mitochondrion 69.23 26.01
CDY01752 Canola vacuole 72.31 24.23
CDY41304 Canola endoplasmic reticulum 81.54 22.65
CDY22194 Canola endoplasmic reticulum 81.54 22.65
Bra034077.1-P Field mustard endoplasmic reticulum 81.54 20.54
Zm00001d028137_P001 Maize cytosol 15.38 19.61
Bra022086.1-P Field mustard cytosol 33.85 19.13
CDY37167 Canola mitochondrion 30.77 18.87
Zm00001d044342_P002 Maize cytosol, mitochondrion 67.69 18.64
CDX84175 Canola cytosol 18.46 13.79
CDY43631 Canola cytosol 20.0 12.87
Zm00001d018970_P001 Maize cytosol 38.46 9.88
Zm00001d048114_P001 Maize cytosol 61.54 7.81
Solyc06g011510.1.1 Tomato cytosol 0.0 0.0
Os10t0350001-00 Rice cytosol, extracellular 0.0 0.0
CDY72261 Canola mitochondrion 0.0 0.0
Protein Annotations
Gene3D:2.40.50.140MapMan:35.1GO:GO:0003674GO:GO:0003735GO:GO:0005198GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022627
UniProt:K4C2Z5InterPro:NA-bd_OB-foldPFAM:PF00164PANTHER:PTHR11652PANTHER:PTHR11652:SF37InterPro:Ribosomal_S12/S23
SUPFAM:SSF50249EnsemblPlantsGene:Solyc06g005110.2EnsemblPlants:Solyc06g005110.2.1UniParc:UPI0002765934::
Description
No Description!
Coordinates
chr6:+:125905..129691
Molecular Weight (calculated)
7379.9 Da
IEP (calculated)
11.039
GRAVY (calculated)
-0.965
Length
65 amino acids
Sequence
(BLAST)
1: MGKTRGMGAD RKLKSHCWRQ RWADKSYKKS HLGNVWKKPF SGSSHAKGIV LEKLDIEAKQ PNSAI
Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.