CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72261	Canola	mitochondrion	53.47	100.0
CDX84175	Canola	cytosol	81.19	94.25
CDY37167	Canola	mitochondrion	80.2	76.42
CDY72262	Canola	cytosol	33.66	72.34
Bra022086.1-P	Field mustard	cytosol	78.22	68.7
Os10t0350001-00	Rice	cytosol, extracellular	29.7	66.67
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	66.34	49.26
Zm00001d012978_P001	Maize	extracellular	66.34	49.26
CDX70336	Canola	cytosol, mitochondrion	65.35	48.53
CDY55693	Canola	cytosol, mitochondrion	65.35	48.53
CDX73991	Canola	cytosol, mitochondrion	65.35	48.53
CDY07936	Canola	cytosol, mitochondrion	65.35	48.53
CDY11236	Canola	cytosol, mitochondrion	65.35	48.53
CDY04874	Canola	cytosol, mitochondrion	65.35	48.53
CDX80847	Canola	cytosol, mitochondrion	65.35	48.53
Os01t0834500-01	Rice	mitochondrion	67.33	47.89
Os03t0818400-01	Rice	nucleus	67.33	47.89
KRH24942	Soybean	cytosol	60.4	47.66
HORVU1Hr1G071570.3	Barley	mitochondrion	67.33	47.22
EES03842	Sorghum	mitochondrion	66.34	47.18
EES19663	Sorghum	mitochondrion	66.34	47.18
EER90632	Sorghum	mitochondrion	66.34	47.18
Zm00001d042966_P001	Maize	mitochondrion	66.34	47.18
Zm00001d010566_P001	Maize	plasma membrane	66.34	47.18
Zm00001d034628_P001	Maize	mitochondrion	66.34	47.18
CDY70106	Canola	mitochondrion	66.34	46.53
CDY62061	Canola	mitochondrion	66.34	46.53
PGSC0003DMT400027147	Potato	mitochondrion	65.35	46.48
PGSC0003DMT400004414	Potato	mitochondrion	65.35	46.48
PGSC0003DMT400045338	Potato	extracellular	65.35	46.48
PGSC0003DMT400065339	Potato	mitochondrion	65.35	46.48
Solyc09g007350.2.1	Tomato	mitochondrion	65.35	46.48
Solyc10g084310.1.1	Tomato	mitochondrion	65.35	46.48
Solyc10g086020.1.1	Tomato	plastid	65.35	46.48
VIT_08s0040g02420.t01	Wine grape	mitochondrion	65.35	46.48
VIT_13s0019g03640.t01	Wine grape	mitochondrion	65.35	46.48
KRG95930	Soybean	mitochondrion	64.36	45.77
KRH19812	Soybean	nucleus	64.36	45.77
KRH32405	Soybean	nucleus	64.36	45.77
KRH67642	Soybean	mitochondrion	64.36	45.77
Solyc06g011510.1.1	Tomato	cytosol	21.78	44.0
HORVU5Hr1G112390.2	Barley	mitochondrion	67.33	43.87
Solyc11g013160.1.1	Tomato	cytosol	24.75	40.98
VIT_06s0004g03410.t01	Wine grape	cytosol	65.35	40.49
KRG89057	Soybean	mitochondrion	48.51	39.84
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	66.34	37.43
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	66.34	37.02
CDY01752	Canola	vacuole	70.3	36.6
GSMUA_Achr2P23030_001	Banana	mitochondrion	66.34	36.41
CDY10413	Canola	mitochondrion	65.35	36.26
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	67.33	36.17
Zm00001d028137_P001	Maize	cytosol	16.83	33.33
GSMUA_Achr2P22920_001	Banana	mitochondrion	53.47	31.21
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	34.65	30.7
CDY41304	Canola	endoplasmic reticulum	65.35	28.21
CDY22194	Canola	endoplasmic reticulum	65.35	28.21
CDY71254	Canola	plastid	30.69	24.41
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	12.87	20.0
Os10t0350450-00	Rice	mitochondrion	33.66	18.28
HORVU6Hr1G043260.1	Barley	mitochondrion	15.84	18.18
KRH55344	Soybean	cytosol	25.74	17.93
Zm00001d036211_P001	Maize	endoplasmic reticulum	16.83	15.45
Zm00001d044342_P002	Maize	cytosol, mitochondrion	33.66	14.41
Zm00001d018970_P001	Maize	cytosol	28.71	11.46
Zm00001d048114_P001	Maize	cytosol	53.47	10.55

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:A0A078I1F8	UniProt:A0A078I1F8	EnsemblPlants:CDY43631	ProteinID:CDY43631
ProteinID:CDY43631.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00076972001	InterPro:NA-bd_OB-fold	PFAM:PF00164
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	SUPFAM:SSF50249	UniParc:UPI0004EEA620	:

Description

BnaC02g32970DBnaC02g32970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I1F8]

Coordinates

chrLK032563:+:161835..162410

Molecular Weight (calculated)

10914.7 Da

IEP (calculated)

10.739

GRAVY (calculated)

0.190

Length

101 amino acids

Sequence
(BLAST)

001: MGSACFQKKY KPLAGASHAK GIVLELIVQL VKNGKKVAAF VLNDVEFMFC VMLFAGRGLI SGFGRKSHAV GDIPGVRYKA VKVSGVLLSA LYKDKKEKPR
101: S

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.