Factsheet for VIT_13s0019g03640.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0040g02420.t01	Wine grape	mitochondrion	99.3	99.3
PGSC0003DMT400065339	Potato	mitochondrion	97.89	97.89
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.96	97.06
AT5G02960.1	Thale cress	mitochondrion	96.48	96.48
Zm00001d042966_P001	Maize	mitochondrion	96.48	96.48
Zm00001d034628_P001	Maize	mitochondrion	96.48	96.48
Zm00001d010566_P001	Maize	plasma membrane	96.48	96.48
EES19663	Sorghum	mitochondrion	96.48	96.48
EES03842	Sorghum	mitochondrion	96.48	96.48
EER90632	Sorghum	mitochondrion	96.48	96.48
Zm00001d012978_P001	Maize	extracellular	92.25	96.32
AT3G09680.1	Thale cress	mitochondrion	95.77	95.77
Bra001300.1-P	Field mustard	mitochondrion	95.77	95.77
Os03t0818400-01	Rice	nucleus	95.77	95.77
Bra028856.1-P	Field mustard	mitochondrion	95.77	95.77
Os01t0834500-01	Rice	mitochondrion	95.77	95.77
CDX73991	Canola	cytosol, mitochondrion	91.55	95.59
CDX70336	Canola	cytosol, mitochondrion	91.55	95.59
Bra009557.1-P	Field mustard	cytosol, mitochondrion	91.55	95.59
CDY55693	Canola	cytosol, mitochondrion	91.55	95.59
CDY11236	Canola	cytosol, mitochondrion	91.55	95.59
CDY07936	Canola	cytosol, mitochondrion	91.55	95.59
CDY04874	Canola	cytosol, mitochondrion	91.55	95.59
CDX80847	Canola	cytosol, mitochondrion	91.55	95.59
Bra005745.1-P	Field mustard	cytosol, mitochondrion	90.85	94.85
KRH24942	Soybean	cytosol	84.51	93.75
HORVU1Hr1G071570.3	Barley	mitochondrion	94.37	93.06
KRG89057	Soybean	mitochondrion	80.28	92.68
Os10t0350001-00	Rice	cytosol, extracellular	27.46	86.67
HORVU5Hr1G112390.2	Barley	mitochondrion	94.37	86.45
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	39.44	86.15
VIT_06s0004g03410.t01	Wine grape	cytosol	98.59	85.89
Bra003985.1-P	Field mustard	mitochondrion	83.1	83.1
CDY62061	Canola	mitochondrion	81.69	80.56
CDY72262	Canola	cytosol	26.06	78.72
CDY70106	Canola	mitochondrion	79.58	78.47
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	97.18	77.09
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	61.27	76.32
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	97.18	76.24
GSMUA_Achr2P23030_001	Banana	mitochondrion	97.18	75.0
CDY10413	Canola	mitochondrion	95.77	74.73
CDX84175	Canola	cytosol	45.77	74.71
Zm00001d028137_P001	Maize	cytosol	26.76	74.51
CDY37167	Canola	mitochondrion	54.23	72.64
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	95.77	72.34
Bra022086.1-P	Field mustard	cytosol	56.34	69.57
GSMUA_Achr2P22920_001	Banana	mitochondrion	84.51	69.36
CDY71254	Canola	plastid	61.97	69.29
CDY72261	Canola	mitochondrion	25.35	66.67
CDY43631	Canola	cytosol	46.48	65.35
CDY01752	Canola	vacuole	81.69	59.79
Zm00001d036211_P001	Maize	endoplasmic reticulum	45.77	59.09
CDY41304	Canola	endoplasmic reticulum	95.77	58.12
CDY22194	Canola	endoplasmic reticulum	95.77	58.12
HORVU6Hr1G043260.1	Barley	mitochondrion	34.51	55.68
Bra034077.1-P	Field mustard	endoplasmic reticulum	95.77	52.71
Os10t0350450-00	Rice	mitochondrion	61.27	46.77
Zm00001d044342_P002	Maize	cytosol, mitochondrion	59.15	35.59
Zm00001d018970_P001	Maize	cytosol	47.18	26.48
Zm00001d048114_P001	Maize	cytosol	73.94	20.51

Protein Annotations

EntrezGene:100242825	wikigene:100242825	EntrezGene:100265528	wikigene:100265528	MapMan:17.1.3.1.24	Gene3D:2.40.50.140
ProteinID:CCB56221	ProteinID:CCB56221.1	UniProt:F6HNK2	EMBL:FN595998	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EntrezGene:LOC100242825	wikigene:LOC100242825
EntrezGene:LOC100265528	wikigene:LOC100265528	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGR:TC53998
TIGRFAMs:TIGR00982	UniParc:UPI0001983707	ArrayExpress:VIT_13s0019g03640	EnsemblPlantsGene:VIT_13s0019g03640	EnsemblPlants:VIT_13s0019g03640.t01	unigene:Vvi.6609
RefSeq:XP_002278466	RefSeq:XP_002278466.1	RefSeq:XP_002284863.1	:	:	:

Description

No Description!

Coordinates

chr13:-:4796650..4799071

Molecular Weight (calculated)

15653.3 Da

IEP (calculated)

11.112

GRAVY (calculated)

-0.535

Length

142 amino acids

Sequence
(BLAST)

001: MGKTRGMGAG RKLKSHRIRQ RWADKAYKKS NLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.