Factsheet for VIT_06s0004g03410.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g03640.t01	Wine grape	mitochondrion	85.89	98.59
VIT_08s0040g02420.t01	Wine grape	mitochondrion	85.28	97.89
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	80.98	97.06
PGSC0003DMT400065339	Potato	mitochondrion	84.05	96.48
Zm00001d012978_P001	Maize	extracellular	80.37	96.32
CDX73991	Canola	cytosol, mitochondrion	79.75	95.59
CDY55693	Canola	cytosol, mitochondrion	79.75	95.59
CDY11236	Canola	cytosol, mitochondrion	79.75	95.59
CDY07936	Canola	cytosol, mitochondrion	79.75	95.59
CDY04874	Canola	cytosol, mitochondrion	79.75	95.59
CDX80847	Canola	cytosol, mitochondrion	79.75	95.59
CDX70336	Canola	cytosol, mitochondrion	79.75	95.59
Bra009557.1-P	Field mustard	cytosol, mitochondrion	79.75	95.59
AT5G02960.1	Thale cress	mitochondrion	82.82	95.07
EES19663	Sorghum	mitochondrion	82.82	95.07
Zm00001d010566_P001	Maize	plasma membrane	82.82	95.07
EES03842	Sorghum	mitochondrion	82.82	95.07
Zm00001d034628_P001	Maize	mitochondrion	82.82	95.07
EER90632	Sorghum	mitochondrion	82.82	95.07
Zm00001d042966_P001	Maize	mitochondrion	82.82	95.07
Bra005745.1-P	Field mustard	cytosol, mitochondrion	79.14	94.85
HORVU1Hr1G071570.3	Barley	mitochondrion	83.44	94.44
Bra001300.1-P	Field mustard	mitochondrion	82.21	94.37
Os01t0834500-01	Rice	mitochondrion	82.21	94.37
Bra028856.1-P	Field mustard	mitochondrion	82.21	94.37
Os03t0818400-01	Rice	nucleus	82.21	94.37
AT3G09680.1	Thale cress	mitochondrion	82.21	94.37
KRH24942	Soybean	cytosol	73.62	93.75
KRG89057	Soybean	mitochondrion	69.33	91.87
HORVU5Hr1G112390.2	Barley	mitochondrion	82.82	87.1
Os10t0350001-00	Rice	cytosol, extracellular	23.93	86.67
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	33.13	83.08
Bra003985.1-P	Field mustard	mitochondrion	71.17	81.69
CDY62061	Canola	mitochondrion	71.78	81.25
CDY70106	Canola	mitochondrion	69.94	79.17
CDY72262	Canola	cytosol	22.7	78.72
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	53.37	76.32
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	83.44	75.98
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	84.05	75.69
CDX84175	Canola	cytosol	39.88	74.71
Zm00001d028137_P001	Maize	cytosol	23.31	74.51
CDY10413	Canola	mitochondrion	82.82	74.18
GSMUA_Achr2P23030_001	Banana	mitochondrion	83.44	73.91
CDY37167	Canola	mitochondrion	47.24	72.64
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	82.21	71.28
CDY71254	Canola	plastid	54.6	70.08
Bra022086.1-P	Field mustard	cytosol	49.08	69.57
GSMUA_Achr2P22920_001	Banana	mitochondrion	73.01	68.79
CDY72261	Canola	mitochondrion	22.09	66.67
CDY43631	Canola	cytosol	40.49	65.35
Zm00001d036211_P001	Maize	endoplasmic reticulum	41.1	60.91
CDY01752	Canola	vacuole	69.94	58.76
CDY41304	Canola	endoplasmic reticulum	84.05	58.55
CDY22194	Canola	endoplasmic reticulum	84.05	58.55
HORVU6Hr1G043260.1	Barley	mitochondrion	30.06	55.68
Bra034077.1-P	Field mustard	endoplasmic reticulum	84.05	53.1
Os10t0350450-00	Rice	mitochondrion	53.99	47.31
Zm00001d044342_P002	Maize	cytosol, mitochondrion	51.53	35.59
Zm00001d018970_P001	Maize	cytosol	41.1	26.48
Zm00001d048114_P001	Maize	cytosol	64.42	20.51

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EMBL:AM474252	ProteinID:CAN75084	ProteinID:CAN75084.1	ProteinID:CCB43638
ProteinID:CCB43638.1	UniProt:F6GTX4	EMBL:FN594951	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133
ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249
TIGR:TC53764	TIGRFAMs:TIGR00982	UniParc:UPI000210A5F4	ArrayExpress:VIT_06s0004g03410	EnsemblPlantsGene:VIT_06s0004g03410	EnsemblPlants:VIT_06s0004g03410.t01
unigene:Vvi.25036	unigene:Vvi.3353	RefSeq:XP_002284863	RefSeq:XP_002284863.1	:	:

Description

No Description!

Coordinates

chr6:+:4260620..4262493

Molecular Weight (calculated)

18201.4 Da

IEP (calculated)

10.971

GRAVY (calculated)

-0.560

Length

163 amino acids

Sequence
(BLAST)

001: MDENINEQIK WLKPKILDGS LLRKTRGMGA GRKLKSHRIR QRWADKAYKK SNLGNEWKKP FAGSSHAKGI VLEKIGIEAK QPNSAIRKCA RVQLIKNGKK
101: IAAFVPNDGC LNYIEENDEV LIAGFGRKGH AVGDIPGVRF KVVKVSGVSL LALFKEKKEK PRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.