CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72262	Canola	cytosol	22.16	91.49
CDY62061	Canola	mitochondrion	64.95	87.5
CDY70106	Canola	mitochondrion	64.43	86.81
KRH19812	Soybean	nucleus	61.34	83.8
PGSC0003DMT400027147	Potato	mitochondrion	60.82	83.1
KRG95930	Soybean	mitochondrion	60.82	83.1
KRH32405	Soybean	nucleus	60.82	83.1
KRH67642	Soybean	mitochondrion	60.82	83.1
Os01t0834500-01	Rice	mitochondrion	60.82	83.1
Os03t0818400-01	Rice	nucleus	60.82	83.1
EES19663	Sorghum	mitochondrion	60.82	83.1
EES03842	Sorghum	mitochondrion	60.82	83.1
EER90632	Sorghum	mitochondrion	60.82	83.1
PGSC0003DMT400004414	Potato	mitochondrion	60.82	83.1
PGSC0003DMT400045338	Potato	extracellular	60.82	83.1
PGSC0003DMT400065339	Potato	mitochondrion	60.82	83.1
Solyc09g007350.2.1	Tomato	mitochondrion	60.82	83.1
Solyc10g084310.1.1	Tomato	mitochondrion	60.82	83.1
Solyc10g086020.1.1	Tomato	plastid	60.82	83.1
Zm00001d010566_P001	Maize	plasma membrane	60.82	83.1
Zm00001d034628_P001	Maize	mitochondrion	60.82	83.1
Zm00001d042966_P001	Maize	mitochondrion	60.82	83.1
Zm00001d012978_P001	Maize	extracellular	57.73	82.35
VIT_08s0040g02420.t01	Wine grape	mitochondrion	59.79	81.69
VIT_13s0019g03640.t01	Wine grape	mitochondrion	59.79	81.69
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	57.22	81.62
CDX84175	Canola	cytosol	36.6	81.61
HORVU1Hr1G071570.3	Barley	mitochondrion	59.79	80.56
KRH24942	Soybean	cytosol	53.09	80.47
CDX73991	Canola	cytosol, mitochondrion	56.19	80.15
CDY55693	Canola	cytosol, mitochondrion	56.19	80.15
CDX70336	Canola	cytosol, mitochondrion	56.19	80.15
CDX80847	Canola	cytosol, mitochondrion	56.19	80.15
CDY11236	Canola	cytosol, mitochondrion	56.19	80.15
CDY04874	Canola	cytosol, mitochondrion	56.19	80.15
CDY07936	Canola	cytosol, mitochondrion	56.19	80.15
KRG89057	Soybean	mitochondrion	49.48	78.05
Os10t0350001-00	Rice	cytosol, extracellular	18.04	77.78
CDY37167	Canola	mitochondrion	42.27	77.36
Solyc11g013160.1.1	Tomato	cytosol	23.71	75.41
HORVU5Hr1G112390.2	Barley	mitochondrion	59.79	74.84
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	24.23	72.31
CDY72261	Canola	mitochondrion	20.1	72.22
Zm00001d028137_P001	Maize	cytosol	18.56	70.59
CDY43631	Canola	cytosol	36.6	70.3
VIT_06s0004g03410.t01	Wine grape	cytosol	58.76	69.94
CDY10413	Canola	mitochondrion	62.37	66.48
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	61.34	66.48
Solyc06g011510.1.1	Tomato	cytosol	17.01	66.0
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	63.92	65.96
GSMUA_Achr2P23030_001	Banana	mitochondrion	61.34	64.67
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	60.31	64.64
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	37.11	63.16
CDY71254	Canola	plastid	38.66	59.06
GSMUA_Achr2P22920_001	Banana	mitochondrion	52.58	58.96
CDY41304	Canola	endoplasmic reticulum	60.82	50.43
CDY22194	Canola	endoplasmic reticulum	60.82	50.43
Zm00001d036211_P001	Maize	endoplasmic reticulum	28.35	50.0
HORVU6Hr1G043260.1	Barley	mitochondrion	20.62	45.45
KRH55344	Soybean	cytosol	32.47	43.45
Os10t0350450-00	Rice	mitochondrion	39.18	40.86
Zm00001d044342_P002	Maize	cytosol, mitochondrion	36.6	30.08
Zm00001d018970_P001	Maize	cytosol	32.47	24.9
Zm00001d048114_P001	Maize	cytosol	48.45	18.36

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:A0A078EKR6	EnsemblPlants:CDY01752	ProteinID:CDY01752	ProteinID:CDY01752.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00112873001	InterPro:NA-bd_OB-fold	PFAM:PF00164
ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249
SignalP:SignalP-noTM	TIGRFAMs:TIGR00982	UniParc:UPI0004EF2A38	SEG:seg	:	:

Description

BnaC06g27920D

Coordinates

chrLK031929:+:26650..27824

Molecular Weight (calculated)

21239.2 Da

IEP (calculated)

10.823

GRAVY (calculated)

-0.145

Length

194 amino acids

Sequence
(BLAST)

001: MPKSLSCGFF FFFFFAKICN SIRVFSCCKV LSHIVACCKS IVAVNLSPPS TNMGKTRGMG SARVQKVHRK KQRWSDKSYK KAHLGNEWNK PLAGSSHAKG
101: IVLELIGMEA KQPNSAIRKC VRVQLVKNGK KVAAFVPNDG CLNLIEPNDE VLISGFGRKG HAVGDIPGVR YKVVNVSGVS LSALYKGKKE KPRS

Best Arabidopsis Sequence Match ( AT3G09680.1 )
(BLAST)

001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.