Factsheet for Os10t0350450-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72262	Canola	cytosol	20.43	80.85
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	27.96	80.0
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	44.62	72.81
CDY71254	Canola	plastid	47.31	69.29
KRG89057	Soybean	mitochondrion	45.7	69.11
Os01t0834500-01	Rice	mitochondrion	50.0	65.49
Os03t0818400-01	Rice	nucleus	50.0	65.49
PGSC0003DMT400004414	Potato	mitochondrion	47.31	61.97
PGSC0003DMT400027147	Potato	mitochondrion	47.31	61.97
PGSC0003DMT400045338	Potato	extracellular	47.31	61.97
PGSC0003DMT400065339	Potato	mitochondrion	47.31	61.97
Solyc09g007350.2.1	Tomato	mitochondrion	47.31	61.97
Solyc10g084310.1.1	Tomato	mitochondrion	47.31	61.97
Solyc10g086020.1.1	Tomato	plastid	47.31	61.97
VIT_08s0040g02420.t01	Wine grape	mitochondrion	47.31	61.97
AT5G02960.1	Thale cress	mitochondrion	46.77	61.27
KRH67642	Soybean	mitochondrion	46.77	61.27
KRH32405	Soybean	nucleus	46.77	61.27
KRG95930	Soybean	mitochondrion	46.77	61.27
VIT_13s0019g03640.t01	Wine grape	mitochondrion	46.77	61.27
Bra001300.1-P	Field mustard	mitochondrion	46.77	61.27
Bra028856.1-P	Field mustard	mitochondrion	46.77	61.27
CDY55693	Canola	cytosol, mitochondrion	44.62	61.03
Bra009557.1-P	Field mustard	cytosol, mitochondrion	44.62	61.03
CDX70336	Canola	cytosol, mitochondrion	44.62	61.03
CDY11236	Canola	cytosol, mitochondrion	44.62	61.03
CDX73991	Canola	cytosol, mitochondrion	44.62	61.03
CDY07936	Canola	cytosol, mitochondrion	44.62	61.03
CDY04874	Canola	cytosol, mitochondrion	44.62	61.03
CDX80847	Canola	cytosol, mitochondrion	44.62	61.03
KRH19812	Soybean	nucleus	46.24	60.56
Bra005745.1-P	Field mustard	cytosol, mitochondrion	44.09	60.29
Zm00001d036211_P001	Maize	endoplasmic reticulum	35.48	60.0
AT3G09680.1	Thale cress	mitochondrion	45.16	59.15
Solyc11g013160.1.1	Tomato	cytosol	19.35	59.02
KRH24942	Soybean	cytosol	38.71	56.25
VIT_06s0004g03410.t01	Wine grape	cytosol	47.31	53.99
Bra003985.1-P	Field mustard	mitochondrion	40.32	52.82
CDY62061	Canola	mitochondrion	39.78	51.39
CDY70106	Canola	mitochondrion	38.71	50.0
CDY10413	Canola	mitochondrion	48.39	49.45
KRH55344	Soybean	cytosol	37.63	48.28
CDY37167	Canola	mitochondrion	25.27	44.34
Bra022086.1-P	Field mustard	cytosol	26.34	42.61
CDY41304	Canola	endoplasmic reticulum	50.0	39.74
CDY22194	Canola	endoplasmic reticulum	50.0	39.74
CDY01752	Canola	vacuole	40.86	39.18
CDX84175	Canola	cytosol	17.2	36.78
Bra034077.1-P	Field mustard	endoplasmic reticulum	50.0	36.05
Zm00001d044342_P002	Maize	cytosol, mitochondrion	43.55	34.32
Solyc06g011510.1.1	Tomato	cytosol	9.14	34.0
CDY43631	Canola	cytosol	18.28	33.66
CDY72261	Canola	mitochondrion	1.61	5.56
Os10t0350001-00	Rice	cytosol, extracellular	1.08	4.44

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	UniProt:A0A0P0XT53	ProteinID:BAT10460.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022627	InterPro:NA-bd_OB-fold
EnsemblPlantsGene:Os10g0350450	EnsemblPlants:Os10t0350450-00	PFAM:PF00164	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23
SUPFAM:SSF50249	UniParc:UPI0003939CCE	:	:	:	:

Description

Similar to 40S ribosomal protein S23. (Os10t0350450-00)

Coordinates

chr10:-:10629434..10635114

Molecular Weight (calculated)

20736.9 Da

IEP (calculated)

10.951

GRAVY (calculated)

-0.472

Length

186 amino acids

Sequence
(BLAST)

001: MTWWAGNWPS RLVVSHQTSR GLWDYTHHPN TNLSAHHANP KSLRFATIES PSSSFLTPLS AAAVIEALLS HRRSEISRPL PPPPWGKTCG MGAGRKLKTH
101: RRNQRWADKA YKKSHFGNEW KKPFAGSSHA KGIVLEKIGI EAKQPNSAIC KCARVQLVKN GKKIAAFVPN DGCLNFIKEN VCVSFF

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.