Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc06g005110.2.1 | Tomato | mitochondrion, nucleus | 48.18 | 81.54 |
GSMUA_Achr4P17160_001 | Banana | cytosol, mitochondrion | 57.27 | 55.26 |
KRG89057 | Soybean | mitochondrion | 58.18 | 52.03 |
CDY71254 | Canola | plastid | 60.0 | 51.97 |
Zm00001d042966_P001 | Maize | mitochondrion | 62.73 | 48.59 |
Zm00001d010566_P001 | Maize | plasma membrane | 62.73 | 48.59 |
Zm00001d034628_P001 | Maize | mitochondrion | 62.73 | 48.59 |
Zm00001d012978_P001 | Maize | extracellular | 59.09 | 47.79 |
VIT_08s0040g02420.t01 | Wine grape | mitochondrion | 60.0 | 46.48 |
Solyc10g086020.1.1 | Tomato | plastid | 60.0 | 46.48 |
Solyc10g084310.1.1 | Tomato | mitochondrion | 60.0 | 46.48 |
Solyc09g007350.2.1 | Tomato | mitochondrion | 60.0 | 46.48 |
PGSC0003DMT400065339 | Potato | mitochondrion | 60.0 | 46.48 |
PGSC0003DMT400045338 | Potato | extracellular | 60.0 | 46.48 |
PGSC0003DMT400027147 | Potato | mitochondrion | 60.0 | 46.48 |
PGSC0003DMT400004414 | Potato | mitochondrion | 60.0 | 46.48 |
VIT_13s0019g03640.t01 | Wine grape | mitochondrion | 59.09 | 45.77 |
AT5G02960.1 | Thale cress | mitochondrion | 59.09 | 45.77 |
Bra028856.1-P | Field mustard | mitochondrion | 58.18 | 45.07 |
KRH67642 | Soybean | mitochondrion | 58.18 | 45.07 |
KRH32405 | Soybean | nucleus | 58.18 | 45.07 |
Bra001300.1-P | Field mustard | mitochondrion | 58.18 | 45.07 |
KRG95930 | Soybean | mitochondrion | 58.18 | 45.07 |
KRH19812 | Soybean | nucleus | 57.27 | 44.37 |
Bra009557.1-P | Field mustard | cytosol, mitochondrion | 54.55 | 44.12 |
CDX70336 | Canola | cytosol, mitochondrion | 54.55 | 44.12 |
CDX73991 | Canola | cytosol, mitochondrion | 54.55 | 44.12 |
CDX80847 | Canola | cytosol, mitochondrion | 54.55 | 44.12 |
CDY04874 | Canola | cytosol, mitochondrion | 54.55 | 44.12 |
CDY11236 | Canola | cytosol, mitochondrion | 54.55 | 44.12 |
CDY07936 | Canola | cytosol, mitochondrion | 54.55 | 44.12 |
CDY55693 | Canola | cytosol, mitochondrion | 54.55 | 44.12 |
Bra005745.1-P | Field mustard | cytosol, mitochondrion | 53.64 | 43.38 |
AT3G09680.1 | Thale cress | mitochondrion | 55.45 | 42.96 |
VIT_06s0004g03410.t01 | Wine grape | cytosol | 60.91 | 41.1 |
Bra003985.1-P | Field mustard | mitochondrion | 51.82 | 40.14 |
CDY62061 | Canola | mitochondrion | 51.82 | 39.58 |
KRH24942 | Soybean | cytosol | 45.45 | 39.06 |
KRH55344 | Soybean | cytosol | 50.91 | 38.62 |
CDY70106 | Canola | mitochondrion | 49.09 | 37.5 |
Solyc11g013160.1.1 | Tomato | cytosol | 20.0 | 36.07 |
Os10t0350450-00 | Rice | mitochondrion | 60.0 | 35.48 |
CDY10413 | Canola | mitochondrion | 58.18 | 35.16 |
CDY72262 | Canola | cytosol | 14.55 | 34.04 |
CDY01752 | Canola | vacuole | 50.0 | 28.35 |
CDY41304 | Canola | endoplasmic reticulum | 60.0 | 28.21 |
CDY22194 | Canola | endoplasmic reticulum | 60.0 | 28.21 |
Zm00001d028137_P001 | Maize | cytosol | 12.73 | 27.45 |
CDY37167 | Canola | mitochondrion | 26.36 | 27.36 |
Bra022086.1-P | Field mustard | cytosol | 28.18 | 26.96 |
Bra034077.1-P | Field mustard | endoplasmic reticulum | 60.0 | 25.58 |
Zm00001d044342_P002 | Maize | cytosol, mitochondrion | 52.73 | 24.58 |
CDX84175 | Canola | cytosol | 14.55 | 18.39 |
CDY43631 | Canola | cytosol | 15.45 | 16.83 |
Zm00001d018970_P001 | Maize | cytosol | 30.0 | 13.04 |
Zm00001d048114_P001 | Maize | cytosol | 45.45 | 9.77 |
Solyc06g011510.1.1 | Tomato | cytosol | 0.0 | 0.0 |
CDY72261 | Canola | mitochondrion | 0.0 | 0.0 |
Protein Annotations
Gene3D:2.40.50.140 | MapMan:35.1 | UniProt:A0A1D6LL85 | ProteinID:AQK80449.1 | GO:GO:0003674 | GO:GO:0003735 |
GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
GO:GO:0030529 | InterPro:NA-bd_OB-fold | PFAM:PF00164 | PIRSF:PIRSF002133 | ScanProsite:PS00055 | PANTHER:PTHR11652 |
PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 | SUPFAM:SSF50249 | SignalP:SignalP-noTM | UniParc:UPI000221A5EE | EnsemblPlantsGene:Zm00001d036211 |
EnsemblPlants:Zm00001d036211_P001 | EnsemblPlants:Zm00001d036211_T001 | SEG:seg | : | : | : |
Description
40S ribosomal protein S23-2
Coordinates
chr6:+:77190077..77193354
Molecular Weight (calculated)
12606.5 Da
IEP (calculated)
11.310
GRAVY (calculated)
-0.842
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKEKKRRKR TGKYNSFMVL ALFSTLVDLM CFKDESSCFS SKTRGMGAGR KLKTHRRNQR WADKAYKKSH LGNEWKKPFA GSSHAKGIVL EKIGIEAKQP
101: NSAIRKCARV
101: NSAIRKCARV
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.