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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • mitochondrion 2
  • cytosol 1
  • extracellular 2
  • endoplasmic reticulum 3
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc06g005110.2.1 Tomato mitochondrion, nucleus 48.18 81.54
GSMUA_Achr4P17160_001 Banana cytosol, mitochondrion 57.27 55.26
KRG89057 Soybean mitochondrion 58.18 52.03
CDY71254 Canola plastid 60.0 51.97
Zm00001d042966_P001 Maize mitochondrion 62.73 48.59
Zm00001d010566_P001 Maize plasma membrane 62.73 48.59
Zm00001d034628_P001 Maize mitochondrion 62.73 48.59
Zm00001d012978_P001 Maize extracellular 59.09 47.79
VIT_08s0040g02420.t01 Wine grape mitochondrion 60.0 46.48
Solyc10g086020.1.1 Tomato plastid 60.0 46.48
Solyc10g084310.1.1 Tomato mitochondrion 60.0 46.48
Solyc09g007350.2.1 Tomato mitochondrion 60.0 46.48
PGSC0003DMT400065339 Potato mitochondrion 60.0 46.48
PGSC0003DMT400045338 Potato extracellular 60.0 46.48
PGSC0003DMT400027147 Potato mitochondrion 60.0 46.48
PGSC0003DMT400004414 Potato mitochondrion 60.0 46.48
VIT_13s0019g03640.t01 Wine grape mitochondrion 59.09 45.77
AT5G02960.1 Thale cress mitochondrion 59.09 45.77
Bra028856.1-P Field mustard mitochondrion 58.18 45.07
KRH67642 Soybean mitochondrion 58.18 45.07
KRH32405 Soybean nucleus 58.18 45.07
Bra001300.1-P Field mustard mitochondrion 58.18 45.07
KRG95930 Soybean mitochondrion 58.18 45.07
KRH19812 Soybean nucleus 57.27 44.37
Bra009557.1-P Field mustard cytosol, mitochondrion 54.55 44.12
CDX70336 Canola cytosol, mitochondrion 54.55 44.12
CDX73991 Canola cytosol, mitochondrion 54.55 44.12
CDX80847 Canola cytosol, mitochondrion 54.55 44.12
CDY04874 Canola cytosol, mitochondrion 54.55 44.12
CDY11236 Canola cytosol, mitochondrion 54.55 44.12
CDY07936 Canola cytosol, mitochondrion 54.55 44.12
CDY55693 Canola cytosol, mitochondrion 54.55 44.12
Bra005745.1-P Field mustard cytosol, mitochondrion 53.64 43.38
AT3G09680.1 Thale cress mitochondrion 55.45 42.96
VIT_06s0004g03410.t01 Wine grape cytosol 60.91 41.1
Bra003985.1-P Field mustard mitochondrion 51.82 40.14
CDY62061 Canola mitochondrion 51.82 39.58
KRH24942 Soybean cytosol 45.45 39.06
KRH55344 Soybean cytosol 50.91 38.62
CDY70106 Canola mitochondrion 49.09 37.5
Solyc11g013160.1.1 Tomato cytosol 20.0 36.07
Os10t0350450-00 Rice mitochondrion 60.0 35.48
CDY10413 Canola mitochondrion 58.18 35.16
CDY72262 Canola cytosol 14.55 34.04
CDY01752 Canola vacuole 50.0 28.35
CDY41304 Canola endoplasmic reticulum 60.0 28.21
CDY22194 Canola endoplasmic reticulum 60.0 28.21
Zm00001d028137_P001 Maize cytosol 12.73 27.45
CDY37167 Canola mitochondrion 26.36 27.36
Bra022086.1-P Field mustard cytosol 28.18 26.96
Bra034077.1-P Field mustard endoplasmic reticulum 60.0 25.58
Zm00001d044342_P002 Maize cytosol, mitochondrion 52.73 24.58
CDX84175 Canola cytosol 14.55 18.39
CDY43631 Canola cytosol 15.45 16.83
Zm00001d018970_P001 Maize cytosol 30.0 13.04
Zm00001d048114_P001 Maize cytosol 45.45 9.77
Solyc06g011510.1.1 Tomato cytosol 0.0 0.0
CDY72261 Canola mitochondrion 0.0 0.0
Protein Annotations
Gene3D:2.40.50.140MapMan:35.1UniProt:A0A1D6LL85ProteinID:AQK80449.1GO:GO:0003674GO:GO:0003735
GO:GO:0005198GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005840
GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538
GO:GO:0030529InterPro:NA-bd_OB-foldPFAM:PF00164PIRSF:PIRSF002133ScanProsite:PS00055PANTHER:PTHR11652
PANTHER:PTHR11652:SF37InterPro:Ribosomal_S12/S23SUPFAM:SSF50249SignalP:SignalP-noTMUniParc:UPI000221A5EEEnsemblPlantsGene:Zm00001d036211
EnsemblPlants:Zm00001d036211_P001EnsemblPlants:Zm00001d036211_T001SEG:seg:::
Description
40S ribosomal protein S23-2
Coordinates
chr6:+:77190077..77193354
Molecular Weight (calculated)
12606.5 Da
IEP (calculated)
11.310
GRAVY (calculated)
-0.842
Length
110 amino acids
Sequence
(BLAST)
001: MKKEKKRRKR TGKYNSFMVL ALFSTLVDLM CFKDESSCFS SKTRGMGAGR KLKTHRRNQR WADKAYKKSH LGNEWKKPFA GSSHAKGIVL EKIGIEAKQP
101: NSAIRKCARV
Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.