Factsheet for Zm00001d048114_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72262	Canola	cytosol	7.03	76.6
Zm00001d012978_P001	Maize	extracellular	20.31	76.47
KRG89057	Soybean	mitochondrion	18.36	76.42
Zm00001d042966_P001	Maize	mitochondrion	21.09	76.06
Zm00001d010566_P001	Maize	plasma membrane	21.09	76.06
Zm00001d034628_P001	Maize	mitochondrion	21.09	76.06
Solyc11g013160.1.1	Tomato	cytosol	8.98	75.41
Solyc10g086020.1.1	Tomato	plastid	20.9	75.35
Solyc10g084310.1.1	Tomato	mitochondrion	20.9	75.35
Solyc09g007350.2.1	Tomato	mitochondrion	20.9	75.35
PGSC0003DMT400065339	Potato	mitochondrion	20.9	75.35
PGSC0003DMT400045338	Potato	extracellular	20.9	75.35
PGSC0003DMT400027147	Potato	mitochondrion	20.9	75.35
PGSC0003DMT400004414	Potato	mitochondrion	20.9	75.35
VIT_08s0040g02420.t01	Wine grape	mitochondrion	20.7	74.65
KRH67642	Soybean	mitochondrion	20.7	74.65
KRH32405	Soybean	nucleus	20.7	74.65
KRG95930	Soybean	mitochondrion	20.7	74.65
AT5G02960.1	Thale cress	mitochondrion	20.7	74.65
CDY11236	Canola	cytosol, mitochondrion	19.73	74.26
CDX80847	Canola	cytosol, mitochondrion	19.73	74.26
CDX73991	Canola	cytosol, mitochondrion	19.73	74.26
CDX70336	Canola	cytosol, mitochondrion	19.73	74.26
CDY04874	Canola	cytosol, mitochondrion	19.73	74.26
CDY07936	Canola	cytosol, mitochondrion	19.73	74.26
Bra009557.1-P	Field mustard	cytosol, mitochondrion	19.73	74.26
CDY55693	Canola	cytosol, mitochondrion	19.73	74.26
Bra001300.1-P	Field mustard	mitochondrion	20.51	73.94
Bra028856.1-P	Field mustard	mitochondrion	20.51	73.94
KRH19812	Soybean	nucleus	20.51	73.94
VIT_13s0019g03640.t01	Wine grape	mitochondrion	20.51	73.94
HORVU1Hr1G071570.3	Barley	mitochondrion	20.7	73.61
Bra005745.1-P	Field mustard	cytosol, mitochondrion	19.53	73.53
Zm00001d028137_P001	Maize	cytosol	7.23	72.55
AT3G09680.1	Thale cress	mitochondrion	20.12	72.54
KRH24942	Soybean	cytosol	17.97	71.88
Os10t0350001-00	Rice	cytosol, extracellular	6.25	71.11
Bra003985.1-P	Field mustard	mitochondrion	18.16	65.49
VIT_06s0004g03410.t01	Wine grape	cytosol	20.51	64.42
CDY62061	Canola	mitochondrion	17.77	63.19
Zm00001d018970_P001	Maize	cytosol	31.05	62.85
CDY70106	Canola	mitochondrion	17.58	62.5
CDY37167	Canola	mitochondrion	12.89	62.26
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	7.81	61.54
CDX84175	Canola	cytosol	10.35	60.92
CDY10413	Canola	mitochondrion	21.29	59.89
Bra022086.1-P	Field mustard	cytosol	13.28	59.13
Solyc06g011510.1.1	Tomato	cytosol	5.47	56.0
CDY71254	Canola	plastid	13.67	55.12
CDY43631	Canola	cytosol	10.55	53.47
CDY01752	Canola	vacuole	18.36	48.45
CDY41304	Canola	endoplasmic reticulum	22.07	48.29
CDY22194	Canola	endoplasmic reticulum	22.07	48.29
CDY72261	Canola	mitochondrion	5.08	48.15
KRH55344	Soybean	cytosol	13.09	46.21
Zm00001d036211_P001	Maize	endoplasmic reticulum	9.77	45.45
Bra034077.1-P	Field mustard	endoplasmic reticulum	22.66	44.96
HORVU6Hr1G043260.1	Barley	mitochondrion	6.45	37.5
Zm00001d044342_P002	Maize	cytosol, mitochondrion	14.26	30.93

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	UniProt:A0A1D6PHK8	ProteinID:AQL08841.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935
GO:GO:0019538	InterPro:IPR000717	InterPro:NA-bd_OB-fold	InterPro:PCI_dom	PFAM:PF00164	PFAM:PF01399
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	UniParc:UPI0008444A48
EnsemblPlantsGene:Zm00001d048114	EnsemblPlants:Zm00001d048114_P001	EnsemblPlants:Zm00001d048114_T001	SEG:seg	:	:

Description

40S ribosomal protein S23-2

Coordinates

chr9:+:150383718..150390329

Molecular Weight (calculated)

56476.6 Da

IEP (calculated)

9.755

GRAVY (calculated)

-0.531

Length

512 amino acids

Sequence
(BLAST)

001: MDPLRSAQEQ RGARAMAVGG LQGAKKRKRE HAEGKAKPRK QVKGGGDGAK RKSHSAAGGY TAHGGAGEVV ARKKTPVTPK EKRLAAKTLY EFDDLESIID
101: RTLKRDFDTE EALWLLKIGL VCIPDSPKIK PSMSMVAKIL QGPFGGPGCQ NQEHEKHFEH FTPNMSKTRN ESAFPQDEID SHREHIYNEL TSDSIASKKP
201: KIRKRENNNS VSSSAPNIPN TQDFITTFCE VVEDFCGKTE IPEDGNCGDW LSIPLGDVKV LVNEITSVRS KRILHEVPMD TVTRLLDVID RQIRYSQVSM
301: NKVEALYRLF KKIGNTFIDD GLINKALSNG KPTVVEFYAN WELDSENPVA DVESIVAKGI RDGAINATID QANGWMVWKE TGRHVVWELG ASSRATAGTR
401: GGLTKHTKSH LGNEWKKPFA GSSHAKGIIL EKIGIEAKQP NSAIHKCARV QLVKDGKKIA AFVPNDGCLN YIEENDEVLI VGRGDIPGVR FKVVKVSGVS
501: LLALFKEKKP RS

Best Arabidopsis Sequence Match ( AT3G09680.1 )
(BLAST)

001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.