Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11236 | Canola | cytosol, mitochondrion | 99.26 | 99.26 |
| Bra009557.1-P | Field mustard | cytosol, mitochondrion | 99.26 | 99.26 |
| Bra001300.1-P | Field mustard | mitochondrion | 99.26 | 95.07 |
| Bra028856.1-P | Field mustard | mitochondrion | 99.26 | 95.07 |
| Zm00001d012978_P001 | Maize | extracellular | 94.85 | 94.85 |
| AT5G02960.1 | Thale cress | mitochondrion | 98.53 | 94.37 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 94.12 | 94.12 |
| Zm00001d042966_P001 | Maize | mitochondrion | 94.85 | 90.85 |
| PGSC0003DMT400004414 | Potato | mitochondrion | 94.85 | 90.85 |
| PGSC0003DMT400027147 | Potato | mitochondrion | 94.85 | 90.85 |
| PGSC0003DMT400045338 | Potato | extracellular | 94.85 | 90.85 |
| PGSC0003DMT400065339 | Potato | mitochondrion | 94.85 | 90.85 |
| Solyc09g007350.2.1 | Tomato | mitochondrion | 94.85 | 90.85 |
| Solyc10g084310.1.1 | Tomato | mitochondrion | 94.85 | 90.85 |
| Solyc10g086020.1.1 | Tomato | plastid | 94.85 | 90.85 |
| VIT_13s0019g03640.t01 | Wine grape | mitochondrion | 94.85 | 90.85 |
| Zm00001d010566_P001 | Maize | plasma membrane | 94.85 | 90.85 |
| EES19663 | Sorghum | mitochondrion | 94.85 | 90.85 |
| EES03842 | Sorghum | mitochondrion | 94.85 | 90.85 |
| EER90632 | Sorghum | mitochondrion | 94.85 | 90.85 |
| Zm00001d034628_P001 | Maize | mitochondrion | 94.85 | 90.85 |
| KRH24942 | Soybean | cytosol | 85.29 | 90.62 |
| VIT_08s0040g02420.t01 | Wine grape | mitochondrion | 94.12 | 90.14 |
| Os03t0818400-01 | Rice | nucleus | 94.12 | 90.14 |
| Os01t0834500-01 | Rice | mitochondrion | 94.12 | 90.14 |
| KRH67642 | Soybean | mitochondrion | 94.12 | 90.14 |
| KRH32405 | Soybean | nucleus | 94.12 | 90.14 |
| KRG95930 | Soybean | mitochondrion | 94.12 | 90.14 |
| KRH19812 | Soybean | nucleus | 93.38 | 89.44 |
| HORVU1Hr1G071570.3 | Barley | mitochondrion | 94.12 | 88.89 |
| Os10t0350001-00 | Rice | cytosol, extracellular | 28.68 | 86.67 |
| KRG89057 | Soybean | mitochondrion | 77.94 | 86.18 |
| Solyc11g013160.1.1 | Tomato | cytosol | 38.24 | 85.25 |
| HORVU5Hr1G112390.2 | Barley | mitochondrion | 94.12 | 82.58 |
| VIT_06s0004g03410.t01 | Wine grape | cytosol | 94.85 | 79.14 |
| Bra003985.1-P | Field mustard | mitochondrion | 81.62 | 78.17 |
| Zm00001d028137_P001 | Maize | cytosol | 27.94 | 74.51 |
| GSMUA_Achr4P17160_001 | Banana | cytosol, mitochondrion | 61.03 | 72.81 |
| Solyc06g011510.1.1 | Tomato | cytosol | 26.47 | 72.0 |
| GSMUA_Achr3P01170_001 | Banana | mitochondrion, plastid | 94.12 | 71.51 |
| Solyc06g005110.2.1 | Tomato | mitochondrion, nucleus | 33.82 | 70.77 |
| GSMUA_Achr5P14800_001 | Banana | cytosol, mitochondrion | 94.12 | 70.72 |
| GSMUA_Achr2P23030_001 | Banana | mitochondrion | 94.12 | 69.57 |
| Bra022086.1-P | Field mustard | cytosol | 58.09 | 68.7 |
| HORVU3Hr1G087380.1 | Barley | mitochondrion, plastid | 94.12 | 68.09 |
| GSMUA_Achr2P22920_001 | Banana | mitochondrion | 81.62 | 64.16 |
| Zm00001d036211_P001 | Maize | endoplasmic reticulum | 43.38 | 53.64 |
| Bra034077.1-P | Field mustard | endoplasmic reticulum | 99.26 | 52.33 |
| HORVU6Hr1G043260.1 | Barley | mitochondrion | 32.35 | 50.0 |
| KRH55344 | Soybean | cytosol | 51.47 | 48.28 |
| Os10t0350450-00 | Rice | mitochondrion | 60.29 | 44.09 |
| Zm00001d044342_P002 | Maize | cytosol, mitochondrion | 60.29 | 34.75 |
| Zm00001d018970_P001 | Maize | cytosol | 46.32 | 24.9 |
| Zm00001d048114_P001 | Maize | cytosol | 73.53 | 19.53 |
Protein Annotations
| MapMan:17.1.3.1.24 | Gene3D:2.40.50.140 | EnsemblPlantsGene:Bra005745 | EnsemblPlants:Bra005745.1 | EnsemblPlants:Bra005745.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0015935 | GO:GO:0019538 | GO:GO:0030529 | UniProt:M4CNF7 | InterPro:NA-bd_OB-fold | PFAM:PF00164 |
| PIRSF:PIRSF002133 | ScanProsite:PS00055 | PANTHER:PTHR11652 | PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 | InterPro:Ribosomal_S23_euk/arc |
| SUPFAM:SSF50249 | TIGRFAMs:TIGR00982 | UniParc:UPI000253FB15 | : | : | : |
Description
AT5G02960 (E=1e-073) | 40S ribosomal protein S23 (RPS23B)
Coordinates
chrA03:+:411721..412299
Molecular Weight (calculated)
15150.6 Da
IEP (calculated)
11.007
GRAVY (calculated)
-0.561
Length
136 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGRKLKRL RINQRWADKQ YKKSHQSNEW KKPFAGSSHA KGIVLEKIGI EAKQPNSAIR KCARVQLIKN GKKIAAFVPN DGCLNYIEEN DEVLIAGFGR
101: KGHAVGDIPG VRFKVVKVSG VSLLALFKEK KEKPRS
101: KGHAVGDIPG VRFKVVKVSG VSLLALFKEK KEKPRS
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.