CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67642	Soybean	mitochondrion	99.3	99.3
KRH32405	Soybean	nucleus	99.3	99.3
KRG95930	Soybean	mitochondrion	99.3	99.3
PGSC0003DMT400045338	Potato	extracellular	97.89	97.89
Solyc09g007350.2.1	Tomato	mitochondrion	97.89	97.89
Solyc10g084310.1.1	Tomato	mitochondrion	97.89	97.89
Solyc10g086020.1.1	Tomato	plastid	97.89	97.89
PGSC0003DMT400027147	Potato	mitochondrion	97.89	97.89
PGSC0003DMT400004414	Potato	mitochondrion	97.89	97.89
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.25	96.32
KRH24942	Soybean	cytosol	86.62	96.09
KRG89057	Soybean	mitochondrion	83.1	95.94
Zm00001d012978_P001	Maize	extracellular	91.55	95.59
EES19663	Sorghum	mitochondrion	95.07	95.07
EES03842	Sorghum	mitochondrion	95.07	95.07
EER90632	Sorghum	mitochondrion	95.07	95.07
Zm00001d034628_P001	Maize	mitochondrion	95.07	95.07
Zm00001d010566_P001	Maize	plasma membrane	95.07	95.07
Zm00001d042966_P001	Maize	mitochondrion	95.07	95.07
Os03t0818400-01	Rice	nucleus	94.37	94.37
Os01t0834500-01	Rice	mitochondrion	94.37	94.37
AT5G02960.1	Thale cress	mitochondrion	94.37	94.37
Bra009557.1-P	Field mustard	cytosol, mitochondrion	90.14	94.12
CDY11236	Canola	cytosol, mitochondrion	90.14	94.12
CDY07936	Canola	cytosol, mitochondrion	90.14	94.12
CDX70336	Canola	cytosol, mitochondrion	90.14	94.12
CDY04874	Canola	cytosol, mitochondrion	90.14	94.12
CDX80847	Canola	cytosol, mitochondrion	90.14	94.12
CDX73991	Canola	cytosol, mitochondrion	90.14	94.12
CDY55693	Canola	cytosol, mitochondrion	90.14	94.12
Bra028856.1-P	Field mustard	mitochondrion	93.66	93.66
Bra001300.1-P	Field mustard	mitochondrion	93.66	93.66
Bra005745.1-P	Field mustard	cytosol, mitochondrion	89.44	93.38
AT3G09680.1	Thale cress	mitochondrion	92.25	92.25
HORVU1Hr1G071570.3	Barley	mitochondrion	92.96	91.67
Os10t0350001-00	Rice	cytosol, extracellular	27.46	86.67
Bra003985.1-P	Field mustard	mitochondrion	85.21	85.21
HORVU5Hr1G112390.2	Barley	mitochondrion	92.96	85.16
CDY62061	Canola	mitochondrion	83.8	82.64
CDY70106	Canola	mitochondrion	82.39	81.25
CDY72262	Canola	cytosol	26.06	78.72
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	95.77	75.98
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	60.56	75.44
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	95.77	75.14
Zm00001d028137_P001	Maize	cytosol	26.76	74.51
GSMUA_Achr2P23030_001	Banana	mitochondrion	95.77	73.91
CDX84175	Canola	cytosol	45.07	73.56
CDY10413	Canola	mitochondrion	93.66	73.08
CDY37167	Canola	mitochondrion	53.52	71.7
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	94.37	71.28
Bra022086.1-P	Field mustard	cytosol	56.34	69.57
GSMUA_Achr2P22920_001	Banana	mitochondrion	84.51	69.36
CDY71254	Canola	plastid	59.86	66.93
CDY72261	Canola	mitochondrion	25.35	66.67
CDY43631	Canola	cytosol	45.77	64.36
CDY01752	Canola	vacuole	83.8	61.34
Zm00001d036211_P001	Maize	endoplasmic reticulum	44.37	57.27
CDY41304	Canola	endoplasmic reticulum	93.66	56.84
CDY22194	Canola	endoplasmic reticulum	93.66	56.84
HORVU6Hr1G043260.1	Barley	mitochondrion	33.1	53.41
KRH55344	Soybean	cytosol	52.82	51.72
Bra034077.1-P	Field mustard	endoplasmic reticulum	93.66	51.55
Os10t0350450-00	Rice	mitochondrion	60.56	46.24
Zm00001d044342_P002	Maize	cytosol, mitochondrion	59.15	35.59
Zm00001d018970_P001	Maize	cytosol	46.48	26.09
Zm00001d048114_P001	Maize	cytosol	73.94	20.51

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EMBL:ACUP02008207	EnsemblPlantsGene:GLYMA_13G137100	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	UniProt:I1LZ09	EnsemblPlants:KRH19812
ProteinID:KRH19812	ProteinID:KRH19812.1	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982
UniParc:UPI00023CF275	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:24972814..24974683

Molecular Weight (calculated)

15746.3 Da

IEP (calculated)

11.112

GRAVY (calculated)

-0.608

Length

142 amino acids

Sequence
(BLAST)

001: MGKTHGMGSA RKLKSHRRRQ RWADKSYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.