Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72261 | Canola | mitochondrion | 66.67 | 55.56 |
| CDX84175 | Canola | cytosol | 66.67 | 34.48 |
| CDY43631 | Canola | cytosol | 66.67 | 29.7 |
| KRH24942 | Soybean | cytosol | 84.44 | 29.69 |
| CDX73991 | Canola | cytosol, mitochondrion | 86.67 | 28.68 |
| CDY55693 | Canola | cytosol, mitochondrion | 86.67 | 28.68 |
| CDY11236 | Canola | cytosol, mitochondrion | 86.67 | 28.68 |
| CDY07936 | Canola | cytosol, mitochondrion | 86.67 | 28.68 |
| CDY04874 | Canola | cytosol, mitochondrion | 86.67 | 28.68 |
| CDX80847 | Canola | cytosol, mitochondrion | 86.67 | 28.68 |
| CDX70336 | Canola | cytosol, mitochondrion | 86.67 | 28.68 |
| Bra009557.1-P | Field mustard | cytosol, mitochondrion | 86.67 | 28.68 |
| Bra005745.1-P | Field mustard | cytosol, mitochondrion | 86.67 | 28.68 |
| Solyc06g011510.1.1 | Tomato | cytosol | 31.11 | 28.0 |
| KRG95930 | Soybean | mitochondrion | 86.67 | 27.46 |
| KRH67642 | Soybean | mitochondrion | 86.67 | 27.46 |
| KRH32405 | Soybean | nucleus | 86.67 | 27.46 |
| Os01t0834500-01 | Rice | mitochondrion | 86.67 | 27.46 |
| Os03t0818400-01 | Rice | nucleus | 86.67 | 27.46 |
| KRH19812 | Soybean | nucleus | 86.67 | 27.46 |
| AT5G02960.1 | Thale cress | mitochondrion | 86.67 | 27.46 |
| PGSC0003DMT400004414 | Potato | mitochondrion | 86.67 | 27.46 |
| PGSC0003DMT400027147 | Potato | mitochondrion | 86.67 | 27.46 |
| PGSC0003DMT400045338 | Potato | extracellular | 86.67 | 27.46 |
| PGSC0003DMT400065339 | Potato | mitochondrion | 86.67 | 27.46 |
| Solyc09g007350.2.1 | Tomato | mitochondrion | 86.67 | 27.46 |
| Solyc10g084310.1.1 | Tomato | mitochondrion | 86.67 | 27.46 |
| Solyc10g086020.1.1 | Tomato | plastid | 86.67 | 27.46 |
| VIT_08s0040g02420.t01 | Wine grape | mitochondrion | 86.67 | 27.46 |
| VIT_13s0019g03640.t01 | Wine grape | mitochondrion | 86.67 | 27.46 |
| Zm00001d010566_P001 | Maize | plasma membrane | 86.67 | 27.46 |
| Bra001300.1-P | Field mustard | mitochondrion | 86.67 | 27.46 |
| EES19663 | Sorghum | mitochondrion | 86.67 | 27.46 |
| AT3G09680.1 | Thale cress | mitochondrion | 86.67 | 27.46 |
| Bra028856.1-P | Field mustard | mitochondrion | 86.67 | 27.46 |
| CDY37167 | Canola | mitochondrion | 62.22 | 26.42 |
| Bra003985.1-P | Field mustard | mitochondrion | 80.0 | 25.35 |
| Bra022086.1-P | Field mustard | cytosol | 64.44 | 25.22 |
| CDY70106 | Canola | mitochondrion | 80.0 | 25.0 |
| CDY62061 | Canola | mitochondrion | 80.0 | 25.0 |
| VIT_06s0004g03410.t01 | Wine grape | cytosol | 86.67 | 23.93 |
| CDY10413 | Canola | mitochondrion | 86.67 | 21.43 |
| Solyc11g013160.1.1 | Tomato | cytosol | 28.89 | 21.31 |
| CDY01752 | Canola | vacuole | 77.78 | 18.04 |
| KRG89057 | Soybean | mitochondrion | 46.67 | 17.07 |
| CDY22194 | Canola | endoplasmic reticulum | 86.67 | 16.67 |
| CDY41304 | Canola | endoplasmic reticulum | 86.67 | 16.67 |
| Bra034077.1-P | Field mustard | endoplasmic reticulum | 86.67 | 15.12 |
| Zm00001d048114_P001 | Maize | cytosol | 71.11 | 6.25 |
| Zm00001d018970_P001 | Maize | cytosol | 24.44 | 4.35 |
| Os10t0350450-00 | Rice | mitochondrion | 4.44 | 1.08 |
| Solyc06g005110.2.1 | Tomato | mitochondrion, nucleus | 0.0 | 0.0 |
| Zm00001d028137_P001 | Maize | cytosol | 0.0 | 0.0 |
| CDY71254 | Canola | plastid | 0.0 | 0.0 |
| KRH55344 | Soybean | cytosol | 0.0 | 0.0 |
| CDY72262 | Canola | cytosol | 0.0 | 0.0 |
| HORVU6Hr1G043260.1 | Barley | mitochondrion | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.40.50.140 | MapMan:35.2 | UniProt:A0A0P0XTN9 | ProteinID:BAT10457.1 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| EnsemblPlantsGene:Os10g0350001 | EnsemblPlants:Os10t0350001-00 | PFAM:PF00164 | PANTHER:PTHR11652 | PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 |
| UniParc:UPI000393B54E | SEG:seg | : | : | : | : |
Description
Similar to 40S ribosomal protein S23 (RPS23A). (Os10t0350001-00)
Coordinates
chr10:-:10590945..10591280
Molecular Weight (calculated)
4918.2 Da
IEP (calculated)
10.913
GRAVY (calculated)
0.184
Length
45 amino acids
Sequence
(BLAST)
(BLAST)
1: DEVLIVGFGW KGHALGDIPG VRLKVVKVSA VSLLALFKEK KKQRS
001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.