Factsheet for Bra001300.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009557.1-P	Field mustard	cytosol, mitochondrion	95.77	100.0
Bra028856.1-P	Field mustard	mitochondrion	100.0	100.0
CDX73991	Canola	cytosol, mitochondrion	95.77	100.0
Bra005745.1-P	Field mustard	cytosol, mitochondrion	95.07	99.26
AT3G09680.1	Thale cress	mitochondrion	95.77	95.77
PGSC0003DMT400045338	Potato	extracellular	95.77	95.77
PGSC0003DMT400027147	Potato	mitochondrion	95.77	95.77
PGSC0003DMT400004414	Potato	mitochondrion	95.77	95.77
PGSC0003DMT400065339	Potato	mitochondrion	95.77	95.77
Solyc09g007350.2.1	Tomato	mitochondrion	95.77	95.77
Solyc10g084310.1.1	Tomato	mitochondrion	95.77	95.77
Solyc10g086020.1.1	Tomato	plastid	95.77	95.77
VIT_13s0019g03640.t01	Wine grape	mitochondrion	95.77	95.77
EES03842	Sorghum	mitochondrion	95.77	95.77
Zm00001d010566_P001	Maize	plasma membrane	95.77	95.77
Zm00001d042966_P001	Maize	mitochondrion	95.77	95.77
EER90632	Sorghum	mitochondrion	95.77	95.77
EES19663	Sorghum	mitochondrion	95.77	95.77
Zm00001d034628_P001	Maize	mitochondrion	95.77	95.77
Zm00001d012978_P001	Maize	extracellular	91.55	95.59
VIT_08s0040g02420.t01	Wine grape	mitochondrion	95.07	95.07
Os01t0834500-01	Rice	mitochondrion	95.07	95.07
Os03t0818400-01	Rice	nucleus	95.07	95.07
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	90.85	94.85
KRG95930	Soybean	mitochondrion	94.37	94.37
KRH32405	Soybean	nucleus	94.37	94.37
KRH67642	Soybean	mitochondrion	94.37	94.37
KRH19812	Soybean	nucleus	93.66	93.66
HORVU1Hr1G071570.3	Barley	mitochondrion	93.66	92.36
KRH24942	Soybean	cytosol	82.39	91.41
KRG89057	Soybean	mitochondrion	78.17	90.24
Os10t0350001-00	Rice	cytosol, extracellular	27.46	86.67
HORVU5Hr1G112390.2	Barley	mitochondrion	93.66	85.81
Solyc11g013160.1.1	Tomato	cytosol	36.62	85.25
Bra003985.1-P	Field mustard	mitochondrion	83.1	83.1
VIT_06s0004g03410.t01	Wine grape	cytosol	94.37	82.21
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	37.32	81.54
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	95.07	75.42
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	95.07	74.59
Zm00001d028137_P001	Maize	cytosol	26.76	74.51
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	59.15	73.68
GSMUA_Achr2P23030_001	Banana	mitochondrion	95.07	73.37
Solyc06g011510.1.1	Tomato	cytosol	25.35	72.0
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	95.07	71.81
Bra022086.1-P	Field mustard	cytosol	56.34	69.57
GSMUA_Achr2P22920_001	Banana	mitochondrion	82.39	67.63
Zm00001d036211_P001	Maize	endoplasmic reticulum	45.07	58.18
Bra034077.1-P	Field mustard	endoplasmic reticulum	100.0	55.04
HORVU6Hr1G043260.1	Barley	mitochondrion	33.8	54.55
KRH55344	Soybean	cytosol	50.0	48.97
Os10t0350450-00	Rice	mitochondrion	61.27	46.77
Zm00001d044342_P002	Maize	cytosol, mitochondrion	58.45	35.17
Zm00001d018970_P001	Maize	cytosol	47.18	26.48
Zm00001d048114_P001	Maize	cytosol	73.94	20.51

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EnsemblPlantsGene:Bra001300	EnsemblPlants:Bra001300.1	EnsemblPlants:Bra001300.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	UniProt:M4EJ90	InterPro:NA-bd_OB-fold	PFAM:PF00164
PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc
SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI0001BA82C5	:	:	:

Description

AT5G02960 (E=5e-078) | 40S ribosomal protein S23 (RPS23B)

Coordinates

chrA03:+:15751841..15753073

Molecular Weight (calculated)

15751.4 Da

IEP (calculated)

11.112

GRAVY (calculated)

-0.591

Length

142 amino acids

Sequence
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HQGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.