Factsheet for Zm00001d044342_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72262	Canola	cytosol	16.1	80.85
Zm00001d028137_P001	Maize	cytosol	16.53	76.47
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	33.47	69.3
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	18.64	67.69
KRG89057	Soybean	mitochondrion	35.17	67.48
Zm00001d012978_P001	Maize	extracellular	37.71	65.44
Zm00001d042966_P001	Maize	mitochondrion	37.71	62.68
Zm00001d010566_P001	Maize	plasma membrane	37.71	62.68
Zm00001d034628_P001	Maize	mitochondrion	37.71	62.68
Bra009557.1-P	Field mustard	cytosol, mitochondrion	35.17	61.03
CDX70336	Canola	cytosol, mitochondrion	35.17	61.03
CDX73991	Canola	cytosol, mitochondrion	35.17	61.03
CDX80847	Canola	cytosol, mitochondrion	35.17	61.03
CDY04874	Canola	cytosol, mitochondrion	35.17	61.03
CDY07936	Canola	cytosol, mitochondrion	35.17	61.03
CDY55693	Canola	cytosol, mitochondrion	35.17	61.03
CDY11236	Canola	cytosol, mitochondrion	35.17	61.03
Bra005745.1-P	Field mustard	cytosol, mitochondrion	34.75	60.29
KRH24942	Soybean	cytosol	32.63	60.16
Solyc09g007350.2.1	Tomato	mitochondrion	36.02	59.86
PGSC0003DMT400065339	Potato	mitochondrion	36.02	59.86
PGSC0003DMT400045338	Potato	extracellular	36.02	59.86
Solyc10g084310.1.1	Tomato	mitochondrion	36.02	59.86
PGSC0003DMT400027147	Potato	mitochondrion	36.02	59.86
PGSC0003DMT400004414	Potato	mitochondrion	36.02	59.86
KRH67642	Soybean	mitochondrion	36.02	59.86
KRH32405	Soybean	nucleus	36.02	59.86
Solyc10g086020.1.1	Tomato	plastid	36.02	59.86
VIT_08s0040g02420.t01	Wine grape	mitochondrion	36.02	59.86
KRG95930	Soybean	mitochondrion	36.02	59.86
VIT_13s0019g03640.t01	Wine grape	mitochondrion	35.59	59.15
AT5G02960.1	Thale cress	mitochondrion	35.59	59.15
KRH19812	Soybean	nucleus	35.59	59.15
CDY71254	Canola	plastid	31.78	59.06
Solyc11g013160.1.1	Tomato	cytosol	15.25	59.02
Bra001300.1-P	Field mustard	mitochondrion	35.17	58.45
Bra028856.1-P	Field mustard	mitochondrion	35.17	58.45
AT3G09680.1	Thale cress	mitochondrion	33.9	56.34
Zm00001d036211_P001	Maize	endoplasmic reticulum	24.58	52.73
VIT_06s0004g03410.t01	Wine grape	cytosol	35.59	51.53
Bra003985.1-P	Field mustard	mitochondrion	30.51	50.7
CDY62061	Canola	mitochondrion	30.51	50.0
CDY70106	Canola	mitochondrion	29.66	48.61
KRH55344	Soybean	cytosol	29.66	48.28
CDY10413	Canola	mitochondrion	35.17	45.6
Os10t0350450-00	Rice	mitochondrion	34.32	43.55
CDY37167	Canola	mitochondrion	19.49	43.4
Bra022086.1-P	Field mustard	cytosol	20.34	41.74
Solyc06g011510.1.1	Tomato	cytosol	8.05	38.0
CDX84175	Canola	cytosol	13.98	37.93
CDY01752	Canola	vacuole	30.08	36.6
CDY41304	Canola	endoplasmic reticulum	35.17	35.47
CDY22194	Canola	endoplasmic reticulum	35.17	35.47
CDY43631	Canola	cytosol	14.41	33.66
Bra034077.1-P	Field mustard	endoplasmic reticulum	35.17	32.17
Zm00001d018970_P001	Maize	cytosol	22.46	20.95
Zm00001d048114_P001	Maize	cytosol	30.93	14.26
CDY72261	Canola	mitochondrion	2.54	11.11

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	UniProt:A0A1D6NL33	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:NA-bd_OB-fold
ProteinID:ONM40937.1	PFAM:PF00164	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	SUPFAM:SSF50249
UniParc:UPI000844E2A3	EnsemblPlantsGene:Zm00001d044342	EnsemblPlants:Zm00001d044342_P002	EnsemblPlants:Zm00001d044342_T002	:	:

Description

40S ribosomal protein S23-2

Coordinates

chr3:-:225515419..225519609

Molecular Weight (calculated)

26962.5 Da

IEP (calculated)

10.188

GRAVY (calculated)

-0.524

Length

236 amino acids

Sequence
(BLAST)

001: MGARRKLKTH IRNQRWADKA YKKSHLGNEW KKPFAGSSHA KGIILAKIGF EAKQPNFTIR KCARVQLVKN GKKIAAFVPN DGCLNYIEEN VSSISPAHRT
101: LDHGQLYLSR SYDFSPWAYM LTTMLFTKER RITNETYKWY LPLECFDLSK TQFISSKECA NCTCHVNFSM FQFCDAPFWM LCARVAAKAQ EKRLELLYIQ
201: LNSTKSSAPQ KPSAPRSNGD IGDPQDLKPG IQISKN

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.