Factsheet for Bra034077.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
cytosol 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001300.1-P	Field mustard	mitochondrion	55.04	100.0
Bra009557.1-P	Field mustard	cytosol, mitochondrion	52.71	100.0
Bra028856.1-P	Field mustard	mitochondrion	55.04	100.0
Bra005745.1-P	Field mustard	cytosol, mitochondrion	52.33	99.26
CDY22194	Canola	endoplasmic reticulum	88.76	97.86
CDY41304	Canola	endoplasmic reticulum	88.76	97.86
AT3G09680.1	Thale cress	mitochondrion	52.71	95.77
Zm00001d034628_P001	Maize	mitochondrion	52.71	95.77
Zm00001d042966_P001	Maize	mitochondrion	52.71	95.77
PGSC0003DMT400004414	Potato	mitochondrion	52.71	95.77
PGSC0003DMT400027147	Potato	mitochondrion	52.71	95.77
PGSC0003DMT400045338	Potato	extracellular	52.71	95.77
PGSC0003DMT400065339	Potato	mitochondrion	52.71	95.77
Solyc09g007350.2.1	Tomato	mitochondrion	52.71	95.77
Solyc10g084310.1.1	Tomato	mitochondrion	52.71	95.77
Solyc10g086020.1.1	Tomato	plastid	52.71	95.77
VIT_13s0019g03640.t01	Wine grape	mitochondrion	52.71	95.77
Zm00001d010566_P001	Maize	plasma membrane	52.71	95.77
EER90632	Sorghum	mitochondrion	52.71	95.77
EES03842	Sorghum	mitochondrion	52.71	95.77
EES19663	Sorghum	mitochondrion	52.71	95.77
Zm00001d012978_P001	Maize	extracellular	50.39	95.59
VIT_08s0040g02420.t01	Wine grape	mitochondrion	52.33	95.07
Os03t0818400-01	Rice	nucleus	52.33	95.07
Os01t0834500-01	Rice	mitochondrion	52.33	95.07
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	50.0	94.85
KRG95930	Soybean	mitochondrion	51.94	94.37
KRH32405	Soybean	nucleus	51.94	94.37
KRH67642	Soybean	mitochondrion	51.94	94.37
KRH19812	Soybean	nucleus	51.55	93.66
HORVU1Hr1G071570.3	Barley	mitochondrion	51.55	92.36
KRH24942	Soybean	cytosol	45.35	91.41
CDY71254	Canola	plastid	44.96	91.34
KRG89057	Soybean	mitochondrion	43.02	90.24
Os10t0350001-00	Rice	cytosol, extracellular	15.12	86.67
HORVU5Hr1G112390.2	Barley	mitochondrion	51.94	86.45
Solyc11g013160.1.1	Tomato	cytosol	20.16	85.25
VIT_06s0004g03410.t01	Wine grape	cytosol	53.1	84.05
Bra003985.1-P	Field mustard	mitochondrion	45.74	83.1
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	20.54	81.54
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	53.1	76.54
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	53.1	75.69
Zm00001d028137_P001	Maize	cytosol	14.73	74.51
GSMUA_Achr2P23030_001	Banana	mitochondrion	53.1	74.46
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	53.88	73.94
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	32.56	73.68
Solyc06g011510.1.1	Tomato	cytosol	13.95	72.0
Bra022086.1-P	Field mustard	cytosol	31.01	69.57
GSMUA_Achr2P22920_001	Banana	mitochondrion	46.12	68.79
Zm00001d036211_P001	Maize	endoplasmic reticulum	25.58	60.0
HORVU6Hr1G043260.1	Barley	mitochondrion	18.6	54.55
KRH55344	Soybean	cytosol	28.68	51.03
Os10t0350450-00	Rice	mitochondrion	36.05	50.0
Zm00001d044342_P002	Maize	cytosol, mitochondrion	32.17	35.17
Zm00001d018970_P001	Maize	cytosol	26.74	27.27
Zm00001d048114_P001	Maize	cytosol	44.96	22.66

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EnsemblPlantsGene:Bra034077	EnsemblPlants:Bra034077.1	EnsemblPlants:Bra034077.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	UniProt:M4EZ34	InterPro:NA-bd_OB-fold	PFAM:PF00164	ScanProsite:PS00055
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982
TMHMM:TMhelix	UniParc:UPI0002544389	SEG:seg	:	:	:

Description

AT5G02960 (E=2e-077) | 40S ribosomal protein S23 (RPS23B)

Coordinates

chrA01:+:27561360..27562790

Molecular Weight (calculated)

28842.9 Da

IEP (calculated)

10.697

GRAVY (calculated)

0.066

Length

258 amino acids

Sequence
(BLAST)

001: MDELLHLCFV LFFLIGCTKL ILTVRSNIAF NENGQTCMSC FRRIGPAEPV ACRALSLCFA LCAFYLLRPV FLFRKFDVLL TWRIVVEVVG VVGARTQRSN
101: LSQLQLLCSV YLAVVNMGKT RGMGAGRKLK RLRINQRWAD KQYKKSHQGN EWKKPFAGSS HAKGIVLEKI GIEAKQPNSA IRKCARVQLI KNGKKIAAFV
201: PNDGCLNYIE ENDEVLIAGF GRKGHAVGDI PGVRFKVVKV SGVSLLALFK EKKEKPRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.