Factsheet for GSMUA_Achr3P01170_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	75.98	100.0
VIT_08s0040g02420.t01	Wine grape	mitochondrion	77.65	97.89
Solyc10g086020.1.1	Tomato	plastid	77.65	97.89
Solyc10g084310.1.1	Tomato	mitochondrion	77.65	97.89
Solyc09g007350.2.1	Tomato	mitochondrion	77.65	97.89
PGSC0003DMT400065339	Potato	mitochondrion	77.65	97.89
PGSC0003DMT400045338	Potato	extracellular	77.65	97.89
PGSC0003DMT400027147	Potato	mitochondrion	77.65	97.89
PGSC0003DMT400004414	Potato	mitochondrion	77.65	97.89
VIT_13s0019g03640.t01	Wine grape	mitochondrion	77.09	97.18
KRH67642	Soybean	mitochondrion	76.54	96.48
KRH32405	Soybean	nucleus	76.54	96.48
KRG95930	Soybean	mitochondrion	76.54	96.48
AT5G02960.1	Thale cress	mitochondrion	75.98	95.77
KRH19812	Soybean	nucleus	75.98	95.77
Bra028856.1-P	Field mustard	mitochondrion	75.42	95.07
Bra001300.1-P	Field mustard	mitochondrion	75.42	95.07
CDY04874	Canola	cytosol, mitochondrion	72.07	94.85
CDX70336	Canola	cytosol, mitochondrion	72.07	94.85
CDX73991	Canola	cytosol, mitochondrion	72.07	94.85
CDX80847	Canola	cytosol, mitochondrion	72.07	94.85
Bra009557.1-P	Field mustard	cytosol, mitochondrion	72.07	94.85
CDY55693	Canola	cytosol, mitochondrion	72.07	94.85
CDY07936	Canola	cytosol, mitochondrion	72.07	94.85
CDY11236	Canola	cytosol, mitochondrion	72.07	94.85
Bra005745.1-P	Field mustard	cytosol, mitochondrion	71.51	94.12
KRH24942	Soybean	cytosol	67.04	93.75
AT3G09680.1	Thale cress	mitochondrion	74.3	93.66
KRG89057	Soybean	mitochondrion	63.69	92.68
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	31.28	86.15
Solyc11g013160.1.1	Tomato	cytosol	29.05	85.25
Bra003985.1-P	Field mustard	mitochondrion	67.04	84.51
VIT_06s0004g03410.t01	Wine grape	cytosol	75.98	83.44
CDY62061	Canola	mitochondrion	65.92	81.94
CDY70106	Canola	mitochondrion	64.25	79.86
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	50.84	79.82
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	79.89	79.01
GSMUA_Achr2P23030_001	Banana	mitochondrion	81.01	78.8
CDY72262	Canola	cytosol	20.67	78.72
CDX84175	Canola	cytosol	36.31	74.71
CDY10413	Canola	mitochondrion	75.42	74.18
GSMUA_Achr2P22920_001	Banana	mitochondrion	70.39	72.83
CDY37167	Canola	mitochondrion	43.02	72.64
Solyc06g011510.1.1	Tomato	cytosol	19.55	70.0
Bra022086.1-P	Field mustard	cytosol	44.69	69.57
CDY72261	Canola	mitochondrion	20.67	68.52
CDY71254	Canola	plastid	48.6	68.5
CDY43631	Canola	cytosol	37.43	66.34
CDY01752	Canola	vacuole	66.48	61.34
CDY41304	Canola	endoplasmic reticulum	76.54	58.55
CDY22194	Canola	endoplasmic reticulum	76.54	58.55
Bra034077.1-P	Field mustard	endoplasmic reticulum	76.54	53.1
KRH55344	Soybean	cytosol	41.9	51.72

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr3G01170_001	EnsemblPlants:GSMUA_Achr3P01170_001	EnsemblPlants:GSMUA_Achr3T01170_001	UniProt:M0SAT5	InterPro:NA-bd_OB-fold	PFAM:PF00164
PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc
SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI000294CEE0	:	:	:

Description

40S ribosomal protein S23 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01170_001]

Coordinates

chr3:+:876375..879245

Molecular Weight (calculated)

19748.3 Da

IEP (calculated)

11.361

GRAVY (calculated)

-0.518

Length

179 amino acids

Sequence
(BLAST)

001: MWCFERLGLC PSPPLLHPSQ PAVAQSARGR RASVSNKMGK TRGMGAGRKL KTHRRRQRWA DKAYKKSHLG NEWKKPFAGS SHAKGIVLEK IGIEAKQPNS
101: AIRKCARVQL IKNGKKIAAF VPNDGCLNFI EENDEVLIAG FGRKGHAVGD IPGVRFKVVK VSGVSLLALF KEKKEKPRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.