CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43631	Canola	cytosol	94.25	81.19
CDY72261	Canola	mitochondrion	48.28	77.78
CDY37167	Canola	mitochondrion	93.1	76.42
CDY72262	Canola	cytosol	39.08	72.34
Bra022086.1-P	Field mustard	cytosol	88.51	66.96
Os10t0350001-00	Rice	cytosol, extracellular	34.48	66.67
Zm00001d012978_P001	Maize	extracellular	75.86	48.53
CDX70336	Canola	cytosol, mitochondrion	74.71	47.79
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	74.71	47.79
CDY55693	Canola	cytosol, mitochondrion	74.71	47.79
CDX73991	Canola	cytosol, mitochondrion	74.71	47.79
CDY07936	Canola	cytosol, mitochondrion	74.71	47.79
CDY11236	Canola	cytosol, mitochondrion	74.71	47.79
CDY04874	Canola	cytosol, mitochondrion	74.71	47.79
CDX80847	Canola	cytosol, mitochondrion	74.71	47.79
KRH24942	Soybean	cytosol	68.97	46.88
CDY62061	Canola	mitochondrion	77.01	46.53
CDY70106	Canola	mitochondrion	77.01	46.53
Zm00001d010566_P001	Maize	plasma membrane	75.86	46.48
Os01t0834500-01	Rice	mitochondrion	75.86	46.48
Os03t0818400-01	Rice	nucleus	75.86	46.48
EES19663	Sorghum	mitochondrion	75.86	46.48
EES03842	Sorghum	mitochondrion	75.86	46.48
EER90632	Sorghum	mitochondrion	75.86	46.48
Zm00001d042966_P001	Maize	mitochondrion	75.86	46.48
Zm00001d034628_P001	Maize	mitochondrion	75.86	46.48
HORVU1Hr1G071570.3	Barley	mitochondrion	75.86	45.83
PGSC0003DMT400027147	Potato	mitochondrion	74.71	45.77
PGSC0003DMT400045338	Potato	extracellular	74.71	45.77
PGSC0003DMT400004414	Potato	mitochondrion	74.71	45.77
PGSC0003DMT400065339	Potato	mitochondrion	74.71	45.77
Solyc09g007350.2.1	Tomato	mitochondrion	74.71	45.77
Solyc10g084310.1.1	Tomato	mitochondrion	74.71	45.77
Solyc10g086020.1.1	Tomato	plastid	74.71	45.77
VIT_08s0040g02420.t01	Wine grape	mitochondrion	74.71	45.77
VIT_13s0019g03640.t01	Wine grape	mitochondrion	74.71	45.77
KRG95930	Soybean	mitochondrion	73.56	45.07
KRH19812	Soybean	nucleus	73.56	45.07
KRH32405	Soybean	nucleus	73.56	45.07
KRH67642	Soybean	mitochondrion	73.56	45.07
HORVU5Hr1G112390.2	Barley	mitochondrion	75.86	42.58
Solyc06g011510.1.1	Tomato	cytosol	24.14	42.0
VIT_06s0004g03410.t01	Wine grape	cytosol	74.71	39.88
KRG89057	Soybean	mitochondrion	56.32	39.84
Solyc11g013160.1.1	Tomato	cytosol	27.59	39.34
CDY01752	Canola	vacuole	81.61	36.6
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	74.71	36.31
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	74.71	35.91
CDY10413	Canola	mitochondrion	74.71	35.71
GSMUA_Achr2P23030_001	Banana	mitochondrion	74.71	35.33
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	75.86	35.11
Zm00001d028137_P001	Maize	cytosol	19.54	33.33
GSMUA_Achr2P22920_001	Banana	mitochondrion	59.77	30.06
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	37.93	28.95
CDY41304	Canola	endoplasmic reticulum	74.71	27.78
CDY22194	Canola	endoplasmic reticulum	74.71	27.78
CDY71254	Canola	plastid	34.48	23.62
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	13.79	18.46
KRH55344	Soybean	cytosol	29.89	17.93
Os10t0350450-00	Rice	mitochondrion	36.78	17.2
HORVU6Hr1G043260.1	Barley	mitochondrion	16.09	15.91
Zm00001d036211_P001	Maize	endoplasmic reticulum	18.39	14.55
Zm00001d044342_P002	Maize	cytosol, mitochondrion	37.93	13.98
Zm00001d018970_P001	Maize	cytosol	32.18	11.07
Zm00001d048114_P001	Maize	cytosol	60.92	10.35

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	GO:A0A078D4W2	EnsemblPlants:CDX84175	ProteinID:CDX84175	ProteinID:CDX84175.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00141216001	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	SUPFAM:SSF50249	UniParc:UPI0004EED9A8	:

Description

BnaC04g09370D

Coordinates

chrLK031836:-:495799..496376

Molecular Weight (calculated)

9261.5 Da

IEP (calculated)

10.576

GRAVY (calculated)

0.030

Length

87 amino acids

Sequence
(BLAST)

1: MGSACFQKPL AGASHAKGIV LELIVQLVKN GKKVAAFVPN DDEVLISGFG RKSHAVGDIP GVRYKVVKVS GVLLSALYKD KKEKPRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.