Factsheet for Zm00001d018970_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028137_P001	Maize	cytosol	15.41	76.47
Solyc11g013160.1.1	Tomato	cytosol	14.62	60.66
CDY72262	Canola	cytosol	10.28	55.32
Solyc06g011510.1.1	Tomato	cytosol	10.67	54.0
Zm00001d034628_P001	Maize	mitochondrion	27.27	48.59
Zm00001d042966_P001	Maize	mitochondrion	27.27	48.59
Zm00001d010566_P001	Maize	plasma membrane	27.27	48.59
Zm00001d012978_P001	Maize	extracellular	26.09	48.53
PGSC0003DMT400004414	Potato	mitochondrion	26.88	47.89
PGSC0003DMT400027147	Potato	mitochondrion	26.88	47.89
PGSC0003DMT400045338	Potato	extracellular	26.88	47.89
PGSC0003DMT400065339	Potato	mitochondrion	26.88	47.89
Solyc09g007350.2.1	Tomato	mitochondrion	26.88	47.89
Solyc10g084310.1.1	Tomato	mitochondrion	26.88	47.89
Solyc10g086020.1.1	Tomato	plastid	26.88	47.89
VIT_08s0040g02420.t01	Wine grape	mitochondrion	26.88	47.89
AT5G02960.1	Thale cress	mitochondrion	26.48	47.18
VIT_13s0019g03640.t01	Wine grape	mitochondrion	26.48	47.18
KRH67642	Soybean	mitochondrion	26.48	47.18
KRH32405	Soybean	nucleus	26.48	47.18
KRG95930	Soybean	mitochondrion	26.48	47.18
Bra001300.1-P	Field mustard	mitochondrion	26.48	47.18
AT3G09680.1	Thale cress	mitochondrion	26.48	47.18
Bra028856.1-P	Field mustard	mitochondrion	26.48	47.18
CDY55693	Canola	cytosol, mitochondrion	25.3	47.06
CDX73991	Canola	cytosol, mitochondrion	25.3	47.06
CDX80847	Canola	cytosol, mitochondrion	25.3	47.06
CDX70336	Canola	cytosol, mitochondrion	25.3	47.06
CDY04874	Canola	cytosol, mitochondrion	25.3	47.06
CDY07936	Canola	cytosol, mitochondrion	25.3	47.06
CDY11236	Canola	cytosol, mitochondrion	25.3	47.06
Bra009557.1-P	Field mustard	cytosol, mitochondrion	25.3	47.06
HORVU1Hr1G071570.3	Barley	mitochondrion	26.48	46.53
KRH19812	Soybean	nucleus	26.09	46.48
Bra005745.1-P	Field mustard	cytosol, mitochondrion	24.9	46.32
KRG89057	Soybean	mitochondrion	22.13	45.53
KRH24942	Soybean	cytosol	22.53	44.53
CDY71254	Canola	plastid	21.34	42.52
Bra003985.1-P	Field mustard	mitochondrion	23.32	41.55
VIT_06s0004g03410.t01	Wine grape	cytosol	26.48	41.1
CDY62061	Canola	mitochondrion	22.92	40.28
CDY37167	Canola	mitochondrion	16.6	39.62
CDY70106	Canola	mitochondrion	22.53	39.58
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	9.88	38.46
CDY10413	Canola	mitochondrion	27.27	37.91
Bra022086.1-P	Field mustard	cytosol	17.0	37.39
KRH55344	Soybean	cytosol	20.55	35.86
CDY01752	Canola	vacuole	24.9	32.47
CDX84175	Canola	cytosol	11.07	32.18
Zm00001d048114_P001	Maize	cytosol	62.85	31.05
Zm00001d036211_P001	Maize	endoplasmic reticulum	13.04	30.0
CDY41304	Canola	endoplasmic reticulum	27.27	29.49
CDY22194	Canola	endoplasmic reticulum	27.27	29.49
CDY43631	Canola	cytosol	11.46	28.71
Bra034077.1-P	Field mustard	endoplasmic reticulum	27.27	26.74
Os10t0350001-00	Rice	cytosol, extracellular	4.35	24.44
Zm00001d044342_P002	Maize	cytosol, mitochondrion	20.95	22.46
CDY72261	Canola	mitochondrion	4.35	20.37
HORVU6Hr1G043260.1	Barley	mitochondrion	6.72	19.32

Protein Annotations

Gene3D:2.40.50.140	MapMan:35.1	UniProt:A0A1D6HTP3	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:NA-bd_OB-fold
ProteinID:ONM51749.1	PFAM:PF00164	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23
SUPFAM:SSF50249	UniParc:UPI0008448419	EnsemblPlantsGene:Zm00001d018970	EnsemblPlants:Zm00001d018970_P001	EnsemblPlants:Zm00001d018970_T001	:

Description

40S ribosomal protein S23-2

Coordinates

chr7:-:11068462..11072400

Molecular Weight (calculated)

28470.0 Da

IEP (calculated)

8.657

GRAVY (calculated)

-0.530

Length

253 amino acids

Sequence
(BLAST)

001: MSMVAKMLQG PFGGPGCQNQ EHEKHFEHFT PNMSKARNES AFPQDEIDSH REHFYNELTS DSIASKKPKI RKRENNNSVS SSAPNIPNTQ DFITTFCEVV
101: EDFCGKPKFL KMEIAVTVSM NKVEALYRLF KKIGNTFIDD GLINKALSNG KPTVVEFYAN CGIEAKQPNS AIRKCARVQL VKDGKKIAAF VPNDGCLNYI
201: EENDEVLIVG FGRNSSVWKK HSPLFTNYVD FLTKCPSIQI HRKYSTGGST EKM

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.