CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009557.1-P	Field mustard	cytosol, mitochondrion	74.73	100.0
CDY55693	Canola	cytosol, mitochondrion	74.73	100.0
CDY11236	Canola	cytosol, mitochondrion	74.73	100.0
CDY07936	Canola	cytosol, mitochondrion	74.73	100.0
CDY04874	Canola	cytosol, mitochondrion	74.73	100.0
CDX80847	Canola	cytosol, mitochondrion	74.73	100.0
CDX73991	Canola	cytosol, mitochondrion	74.73	100.0
CDX70336	Canola	cytosol, mitochondrion	74.73	100.0
AT5G02960.1	Thale cress	mitochondrion	77.47	99.3
PGSC0003DMT400004414	Potato	mitochondrion	74.73	95.77
PGSC0003DMT400027147	Potato	mitochondrion	74.73	95.77
EES19663	Sorghum	mitochondrion	74.73	95.77
EES03842	Sorghum	mitochondrion	74.73	95.77
EER90632	Sorghum	mitochondrion	74.73	95.77
Solyc09g007350.2.1	Tomato	mitochondrion	74.73	95.77
PGSC0003DMT400045338	Potato	extracellular	74.73	95.77
PGSC0003DMT400065339	Potato	mitochondrion	74.73	95.77
Solyc10g084310.1.1	Tomato	mitochondrion	74.73	95.77
Solyc10g086020.1.1	Tomato	plastid	74.73	95.77
Zm00001d042966_P001	Maize	mitochondrion	74.73	95.77
VIT_13s0019g03640.t01	Wine grape	mitochondrion	74.73	95.77
Zm00001d010566_P001	Maize	plasma membrane	74.73	95.77
Zm00001d034628_P001	Maize	mitochondrion	74.73	95.77
Zm00001d012978_P001	Maize	extracellular	71.43	95.59
Os03t0818400-01	Rice	nucleus	74.18	95.07
Os01t0834500-01	Rice	mitochondrion	74.18	95.07
VIT_08s0040g02420.t01	Wine grape	mitochondrion	74.18	95.07
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	70.88	94.85
KRH67642	Soybean	mitochondrion	73.63	94.37
KRH32405	Soybean	nucleus	73.63	94.37
KRG95930	Soybean	mitochondrion	73.63	94.37
KRH19812	Soybean	nucleus	73.08	93.66
HORVU1Hr1G071570.3	Barley	mitochondrion	73.08	92.36
KRH24942	Soybean	cytosol	64.29	91.41
KRG89057	Soybean	mitochondrion	60.99	90.24
HORVU5Hr1G112390.2	Barley	mitochondrion	74.18	87.1
Os10t0350001-00	Rice	cytosol, extracellular	21.43	86.67
Solyc11g013160.1.1	Tomato	cytosol	28.57	85.25
VIT_06s0004g03410.t01	Wine grape	cytosol	74.18	82.82
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	29.12	81.54
CDY62061	Canola	mitochondrion	63.74	80.56
CDY72262	Canola	cytosol	20.33	78.72
CDY70106	Canola	mitochondrion	62.09	78.47
CDY71254	Canola	plastid	53.85	77.17
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	74.18	75.42
GSMUA_Achr2P23030_001	Banana	mitochondrion	75.82	75.0
CDX84175	Canola	cytosol	35.71	74.71
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	74.18	74.59
Zm00001d028137_P001	Maize	cytosol	20.88	74.51
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	76.92	74.47
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	46.15	73.68
CDY37167	Canola	mitochondrion	42.31	72.64
Solyc06g011510.1.1	Tomato	cytosol	19.78	72.0
GSMUA_Achr2P22920_001	Banana	mitochondrion	64.29	67.63
CDY72261	Canola	mitochondrion	19.78	66.67
CDY43631	Canola	cytosol	36.26	65.35
CDY41304	Canola	endoplasmic reticulum	80.22	62.39
CDY22194	Canola	endoplasmic reticulum	80.22	62.39
CDY01752	Canola	vacuole	66.48	62.37
Zm00001d036211_P001	Maize	endoplasmic reticulum	35.16	58.18
HORVU6Hr1G043260.1	Barley	mitochondrion	26.37	54.55
KRH55344	Soybean	cytosol	41.21	51.72
Os10t0350450-00	Rice	mitochondrion	49.45	48.39
Zm00001d044342_P002	Maize	cytosol, mitochondrion	45.6	35.17
Zm00001d018970_P001	Maize	cytosol	37.91	27.27
Zm00001d048114_P001	Maize	cytosol	59.89	21.29

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:A0A078FE74	UniProt:A0A078FE74	EnsemblPlants:CDY10413	ProteinID:CDY10413
ProteinID:CDY10413.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00032327001
InterPro:NA-bd_OB-fold	PFAM:PF00164	ScanProsite:PS00055	PFscan:PS51257	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37
InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI0004EEDFC7	:

Description

BnaCnng03140DBnaCnng03140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FE74]

Coordinates

chrLK032003:+:330539..333019

Molecular Weight (calculated)

20275.1 Da

IEP (calculated)

11.086

GRAVY (calculated)

-0.408

Length

182 amino acids

Sequence
(BLAST)

001: MGKKIVSQSI CHVTTSHYLS TLACRINLFA VDLHLLRRTN MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HQGNEWKKPF AGSSHAKGIV LEKIGIEAKQ
101: PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.